Dario Righelli
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/DEScan2 |
| Branch: RELEASE_3_9 |
| Last Commit: a5f2d38 |
| Last Changed Date: 2019-05-02 11:54:10 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:40:46 -0400 (Wed, 16 Oct 2019).
| Package 422/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DEScan2 1.4.0 Dario Righelli
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: DEScan2 |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEScan2_1.4.0.tar.gz && rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEScan2_1.4.0.zip && rm DEScan2_1.4.0.tar.gz DEScan2_1.4.0.zip |
| StartedAt: 2019-10-15 20:47:38 -0400 (Tue, 15 Oct 2019) |
| EndedAt: 2019-10-15 20:49:38 -0400 (Tue, 15 Oct 2019) |
| EllapsedTime: 119.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/DEScan2_1.4.0.tar.gz && rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL DEScan2_1.4.0.zip && rm DEScan2_1.4.0.tar.gz DEScan2_1.4.0.zip
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install for i386
* installing *source* package 'DEScan2' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEScan2.buildbin-libdir/00LOCK-DEScan2/00new/DEScan2/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DEScan2'
finding HTML links ... done
DEScan2 html
RleListToRleMatrix html
binToChrCoordMatRowNames html
binnedCovOnly html
binnedCoverage html
c_get_disjoint_max_win html
computeCoverageMovingWindowOnChr html
computeLambdaOnChr html
computeZ html
constructBedRanges html
countFinalRegions html
createGranges html
cutGRangesPerChromosome html
divideEachSampleByChromosomes html
evenRunMean html
evenRunSum html
finalRegions html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeKXvfw/R.INSTALL23285d557249/DEScan2/man/finalRegions.Rd:34: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
findOverlapsOverSamples html
findPeaks html
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeKXvfw/R.INSTALL23285d557249/DEScan2/man/findPeaks.Rd:61: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
fromSamplesToChrsGRangesList html
generateDFofSamplesPerChromosomes html
get_disjoint_max_win html
giveUniqueNamesToPeaksOverSamples html
initMergedPeaksNames html
keepRelevantChrs html
rcpparma_get_disjoint_max_win html
readBamAsBed html
readBedFile html
readFilesAsGRangesList html
saveGRangesAsBed html
saveGRangesAsTsv html
setGRGenomeInfo html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DEScan2' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEScan2.buildbin-libdir/DEScan2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEScan2' as DEScan2_1.4.0.zip
* DONE (DEScan2)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'DEScan2' successfully unpacked and MD5 sums checked