Package: DEScan2

Version: 1.4.0

Command: rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.4.0.tar.gz

StartedAt: 2019-10-16 09:03:50 -0400 (Wed, 16 Oct 2019)

EndedAt: 2019-10-16 09:05:27 -0400 (Wed, 16 Oct 2019)

EllapsedTime: 96.9 seconds

RetCode: 0

Status:  OK

PackageFile: DEScan2_1.4.0.zip

PackageFileSize: 3.043 MiB

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### Running command:
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###   rm -rf DEScan2.buildbin-libdir && mkdir DEScan2.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEScan2.buildbin-libdir DEScan2_1.4.0.tar.gz
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install for i386

* installing *source* package 'DEScan2' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEScan2.buildbin-libdir/00LOCK-DEScan2/00new/DEScan2/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEScan2'
    finding HTML links ... done
    DEScan2                                 html  
    RleListToRleMatrix                      html  
    binToChrCoordMatRowNames                html  
    binnedCovOnly                           html  
    binnedCoverage                          html  
    c_get_disjoint_max_win                  html  
    computeCoverageMovingWindowOnChr        html  
    computeLambdaOnChr                      html  
    computeZ                                html  
    constructBedRanges                      html  
    countFinalRegions                       html  
    createGranges                           html  
    cutGRangesPerChromosome                 html  
    divideEachSampleByChromosomes           html  
    evenRunMean                             html  
    evenRunSum                              html  
    finalRegions                            html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeC1Qk7/R.INSTALL1f901eae36a9/DEScan2/man/finalRegions.Rd:34: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    findOverlapsOverSamples                 html  
    findPeaks                               html  
Rd warning: C:/Users/biocbuild/bbs-3.9-bioc/tmpdir/RtmpeC1Qk7/R.INSTALL1f901eae36a9/DEScan2/man/findPeaks.Rd:61: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
    fromSamplesToChrsGRangesList            html  
    generateDFofSamplesPerChromosomes       html  
    get_disjoint_max_win                    html  
    giveUniqueNamesToPeaksOverSamples       html  
    initMergedPeaksNames                    html  
    keepRelevantChrs                        html  
    rcpparma_get_disjoint_max_win           html  
    readBamAsBed                            html  
    readBedFile                             html  
    readFilesAsGRangesList                  html  
    saveGRangesAsBed                        html  
    saveGRangesAsTsv                        html  
    setGRGenomeInfo                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEScan2' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.9-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/RcppArmadillo/include"   -I"C:/extsoft/include"     -O2 -Wall  -mtune=generic -c rcpparma_max_win.cpp -o rcpparma_max_win.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o DEScan2.dll tmp.def RcppExports.o rcpparma_max_win.o -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/DEScan2.buildbin-libdir/DEScan2/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEScan2' as DEScan2_1.4.0.zip
* DONE (DEScan2)