Back to Long Tests report for BioC 3.20

This page was generated on 2024-06-15 23:55 -0400 (Sat, 15 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4685
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4420
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4400
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-06-15 09:55 -0400 (Sat, 15 Jun 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 347e93f
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino4Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino4

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.9.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
StartedAt: 2024-06-15 16:23:31 -0400 (Sat, 15 Jun 2024)
EndedAt: 2024-06-15 16:32:10 -0400 (Sat, 15 Jun 2024)
EllapsedTime: 519.1 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbNcbi.Rcheck
Warnings: NA

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout.fail


R version 4.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-06-15 16:30:20.276][biodb::testContext]
biodb.INFO [2024-06-15 16:30:20.290][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:30:20.291][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-06-15 16:30:20.292][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:30:20.294][biodb::testContext]
biodb.INFO [2024-06-15 16:30:20.301][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:30:20.304][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-15 16:30:20.329][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:20.331][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-15 16:30:20.333][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.335][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.339][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-15 16:30:20.361][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.368][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-15 16:30:20.369][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.374][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-15 16:30:20.375][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-15 16:30:20.377][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-15 16:30:20.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.381][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-15 16:30:20.382][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-15 16:30:20.384][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.388][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-15 16:30:20.390][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-15 16:30:20.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.394][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-15 16:30:20.395][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-15 16:30:20.397][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-15 16:30:20.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.401][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-15 16:30:20.402][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.407][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-15 16:30:20.408][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-15 16:30:20.410][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-15 16:30:20.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.414][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:30:20.416][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-15 16:30:20.417][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-15 16:30:20.418][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-15 16:30:20.419][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-15 16:30:20.421][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-15 16:30:20.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.425][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-15 16:30:20.426][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-15 16:30:20.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.431][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-15 16:30:20.432][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-15 16:30:20.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.437][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-15 16:30:20.438][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-15 16:30:20.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.443][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-15 16:30:20.445][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-15 16:30:20.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.452][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-15 16:30:20.454][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-15 16:30:20.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.461][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:30:20.463][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-15 16:30:20.469][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-15 16:30:20.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.477][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-15 16:30:20.479][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-15 16:30:20.481][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-15 16:30:20.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.491][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-15 16:30:20.554][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.581][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-15 16:30:20.583][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.585][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:20.587][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.589][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.591][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.593][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.595][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:30:20.597][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:20.599][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.601][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-15 16:30:20.603][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:20.605][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.607][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.609][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:20.609][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:20.609][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:20.609][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:30:20.609][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:30:20.612][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:20.613][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.615][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.617][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:20.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.620][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.622][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.624][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.626][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:20.627][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:20.629][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.631][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.633][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-15 16:30:20.636][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.638][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:30:20.640][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.641][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:20.643][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.645][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.647][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.649][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.651][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:30:20.652][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:20.654][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.656][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-15 16:30:20.658][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:20.660][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.662][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.663][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:20.663][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:20.663][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:20.663][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:30:20.663][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:30:20.665][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:20.667][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.671][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:20.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.676][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.678][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.680][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:20.681][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:20.683][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.685][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.687][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-15 16:30:20.690][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.692][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-15 16:30:20.694][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.696][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:20.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.699][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.703][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.705][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:30:20.707][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:20.709][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.711][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-15 16:30:20.712][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:20.714][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.716][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.718][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.720][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:20.722][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.723][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.725][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:20.727][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.729][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.730][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.732][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.734][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:20.735][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:20.737][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.739][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.741][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-15 16:30:20.744][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.746][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:30:20.748][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.749][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:20.751][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.753][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.755][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.757][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.758][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:30:20.760][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:20.762][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.764][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-15 16:30:20.766][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:20.767][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.769][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:20.771][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.773][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:20.774][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.778][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:20.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:20.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:20.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:20.784][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.786][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:20.788][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:20.789][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:20.791][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:20.796][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:20.797][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.849][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:20.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:20.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:20.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:20.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:20.945][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-15 16:30:20.951][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-15 16:30:20.953][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-15 16:30:20.956][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-15 16:30:20.958][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:30:20.961][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-15 16:30:20.963][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-15 16:30:20.966][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-15 16:30:20.968][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-15 16:30:20.970][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-15 16:30:20.973][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:30:20.975][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-15 16:30:20.978][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-15 16:30:20.980][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-15 16:30:20.983][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:30:20.985][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:30:20.987][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-15 16:30:20.990][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-15 16:30:20.992][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:30:20.995][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-15 16:30:20.997][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-15 16:30:21.000][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-15 16:30:21.002][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-15 16:30:21.005][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-15 16:30:21.007][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-15 16:30:21.009][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-15 16:30:21.012][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-15 16:30:21.014][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-15 16:30:21.017][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-15 16:30:21.019][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-15 16:30:21.022][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-15 16:30:21.024][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-15 16:30:21.026][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-15 16:30:21.029][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-15 16:30:21.031][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-15 16:30:21.034][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-15 16:30:21.036][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-15 16:30:21.038][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-15 16:30:21.041][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-15 16:30:21.043][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-15 16:30:21.045][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-15 16:30:21.048][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-15 16:30:21.050][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-15 16:30:21.053][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-15 16:30:21.055][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-15 16:30:21.058][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:30:21.060][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-15 16:30:21.062][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-15 16:30:21.065][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-15 16:30:21.067][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-15 16:30:21.070][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-15 16:30:21.072][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-15 16:30:21.074][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-15 16:30:21.077][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-15 16:30:21.079][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-15 16:30:21.082][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-15 16:30:21.084][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-15 16:30:21.086][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-15 16:30:21.089][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-15 16:30:21.091][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-15 16:30:21.094][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-15 16:30:21.096][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-15 16:30:21.098][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-15 16:30:21.101][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-15 16:30:21.103][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-15 16:30:21.105][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-15 16:30:21.108][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:30:21.110][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:30:21.112][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-15 16:30:21.115][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-15 16:30:21.117][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-15 16:30:21.120][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-15 16:30:21.121][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-15 16:30:21.123][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-15 16:30:21.124][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-15 16:30:21.126][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-15 16:30:21.128][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-15 16:30:21.129][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-15 16:30:21.131][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-15 16:30:21.132][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-15 16:30:21.134][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-15 16:30:21.136][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-15 16:30:21.144][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-15 16:30:21.177][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-15 16:30:21.181][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:30:21.184][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:21.186][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.188][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:21.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:21.341][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-15 16:30:21.372][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:21.376][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.378][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-15 16:30:21.380][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.383][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:21.385][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.387][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.389][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.391][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.393][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-15 16:30:21.395][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:21.397][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.399][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-15 16:30:21.401][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:21.404][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-15 16:30:21.404][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-15 16:30:21.406][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:21.407][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:21.409][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:30:21.411][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.412][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.414][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:21.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.418][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.419][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.421][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:21.421][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-15 16:30:21.423][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:21.425][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:21.426][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.428][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:21.430][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:30:21.433][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.435][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-15 16:30:21.437][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.475][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:21.477][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.481][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.482][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.484][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:21.486][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:21.488][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.489][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-15 16:30:21.491][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-15 16:30:21.493][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-15 16:30:21.495][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:21.496][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:21.498][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:30:21.500][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.501][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.503][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:21.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.508][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.510][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:21.510][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:21.512][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:21.513][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:21.515][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.517][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:21.519][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:30:21.522][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:21.524][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-15 16:30:21.526][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.528][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:21.529][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.531][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.533][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.535][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.537][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:21.539][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:21.540][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.542][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-15 16:30:21.544][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.545][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:21.547][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:21.549][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:21.549][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:21.549][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:21.551][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:30:21.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.556][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:21.557][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.559][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.561][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.562][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:21.562][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:21.562][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:30:21.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:21.566][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:21.567][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.569][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:30:21.571][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:30:21.575][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.576][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-15 16:30:21.578][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.580][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:21.582][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.584][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.585][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.587][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.589][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:21.591][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:21.592][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.594][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-15 16:30:21.596][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:21.598][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-15 16:30:21.598][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:30:21.599][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:21.601][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:21.603][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:30:21.604][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.606][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:21.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:21.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:21.613][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:21.614][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:21.614][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:21.614][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:30:21.616][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:21.618][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:21.619][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:21.621][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:30:21.630][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-15 16:30:21.633][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:30:21.636][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:30:21.639][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-15 16:30:21.641][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:30:21.644][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-15 16:30:21.677][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:21.679][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-15 16:30:21.684][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:21.690][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-15 16:30:21.695][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:21.697][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:21.700][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-06-15 16:30:21.702][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:21.704][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:21.706][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-06-15 16:30:21.720][biodb::testThat]
biodb.INFO [2024-06-15 16:30:21.722][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-15 16:30:21.724][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:21.726][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:21.777][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-06-15 16:30:21.781][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:21.787][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:21.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:21.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:21.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:21.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:21.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:21.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:21.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:21.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:21.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:21.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:21.991][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:22.012][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.061][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:22.216][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-06-15 16:30:22.221][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:22.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:22.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:22.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.287][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:22.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.295][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:22.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:22.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.802][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.810][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.817][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:22.819][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.824][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:22.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.845][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.848][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.851][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.861][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:22.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:22.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:22.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:22.931][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-06-15 16:30:22.965][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:22.967][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:22.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:22.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:22.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:22.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:22.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:22.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:22.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:23.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.025][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.027][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.034][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:23.107][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-15 16:30:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:23.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:23.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.324][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.366][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.368][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.395][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.397][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.400][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.409][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.413][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:30:23.431][biodb::testThat]
biodb.INFO [2024-06-15 16:30:23.433][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-15 16:30:23.434][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:23.435][biodb::testThat]
biodb.DEBUG[2024-06-15 16:30:23.444][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-06-15 16:30:23.451][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:30:23.461][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-06-15 16:30:23.464][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-06-15 16:30:23.544][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-06-15 16:30:23.546][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:23.549][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:30:23.551][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:23.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:23.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:23.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:23.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:23.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:23.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:23.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.617][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.619][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:23.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:23.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:23.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:23.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:23.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:23.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:23.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.731][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.733][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:23.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:23.860][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-06-15 16:30:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:23.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:23.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:23.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:23.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:23.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:23.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:23.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:23.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:23.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:23.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:30:23.923][biodb::testThat]
biodb.INFO [2024-06-15 16:30:23.926][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-15 16:30:23.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:23.928][biodb::testThat]
biodb.INFO [2024-06-15 16:30:23.938][biodb::testThat]
biodb.INFO [2024-06-15 16:30:23.940][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-15 16:30:23.941][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:23.942][biodb::testThat]
biodb.WARN [2024-06-15 16:30:23.960][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-15 16:30:23.980][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-15 16:30:23.996][biodb::testThat]
biodb.INFO [2024-06-15 16:30:23.997][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-15 16:30:23.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:24.000][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.053][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:24.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.063][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:24.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:24.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.077][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:24.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:24.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:24.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:30:24.118][biodb::testThat]
biodb.INFO [2024-06-15 16:30:24.119][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-15 16:30:24.121][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:24.122][biodb::testThat]
biodb.INFO [2024-06-15 16:30:24.135][biodb::testThat]
biodb.INFO [2024-06-15 16:30:24.137][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-15 16:30:24.138][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:24.139][biodb::testThat]
biodb.INFO [2024-06-15 16:30:24.151][biodb::testThat]
biodb.INFO [2024-06-15 16:30:24.152][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-15 16:30:24.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:24.155][biodb::testThat]
biodb.DEBUG[2024-06-15 16:30:24.160][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-06-15 16:30:26.071][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-06-15 16:30:28.147][biodb::testThat]
biodb.INFO [2024-06-15 16:30:28.149][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-15 16:30:28.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:28.153][biodb::testThat]
biodb.INFO [2024-06-15 16:30:28.167][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-15 16:30:28.170][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-15 16:30:28.172][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-15 16:30:28.174][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-15 16:30:28.175][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.179][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.183][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-15 16:30:28.203][biodb::testContext]
biodb.INFO [2024-06-15 16:30:28.205][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:30:28.206][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-06-15 16:30:28.218][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:30:28.219][biodb::testContext]
biodb.INFO [2024-06-15 16:30:28.223][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:30:28.226][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-15 16:30:28.232][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:28.233][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-15 16:30:28.235][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.239][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-15 16:30:28.241][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.245][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-15 16:30:28.247][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.251][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-15 16:30:28.252][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-15 16:30:28.254][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-15 16:30:28.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.258][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-15 16:30:28.259][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-15 16:30:28.261][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.265][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-15 16:30:28.266][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-15 16:30:28.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.271][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-15 16:30:28.272][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-15 16:30:28.274][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-15 16:30:28.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.278][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-15 16:30:28.279][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.285][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-15 16:30:28.287][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-15 16:30:28.288][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-15 16:30:28.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.293][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:30:28.294][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-15 16:30:28.295][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-15 16:30:28.297][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-15 16:30:28.298][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-15 16:30:28.299][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-15 16:30:28.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.304][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-15 16:30:28.305][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-15 16:30:28.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.310][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-15 16:30:28.311][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-15 16:30:28.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.316][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-15 16:30:28.317][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-15 16:30:28.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.322][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-15 16:30:28.323][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-15 16:30:28.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.328][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-15 16:30:28.329][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-15 16:30:28.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.334][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:30:28.335][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-15 16:30:28.339][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-15 16:30:28.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.343][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-15 16:30:28.344][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-15 16:30:28.346][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-15 16:30:28.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.353][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-15 16:30:28.356][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.358][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-15 16:30:28.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.362][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:28.364][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.366][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.377][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.380][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.382][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:30:28.384][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:28.386][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.388][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-15 16:30:28.389][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:28.391][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.393][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.395][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:28.395][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:28.395][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:28.395][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:30:28.395][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:30:28.397][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:28.399][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.400][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.402][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:28.403][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.405][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.406][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.407][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:28.409][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:28.410][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.411][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.413][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-15 16:30:28.415][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.416][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:30:28.417][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.419][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:28.420][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.421][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.422][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.423][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.425][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:30:28.426][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:28.427][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.428][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-15 16:30:28.430][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:28.431][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.432][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.434][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:28.434][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:28.434][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:28.434][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:30:28.434][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:30:28.435][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:28.436][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:28.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.442][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.443][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.445][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:28.446][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:28.447][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.448][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.450][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-15 16:30:28.452][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.453][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-15 16:30:28.454][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:28.457][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.458][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.460][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.461][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.462][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:30:28.463][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:28.465][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.466][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-15 16:30:28.467][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:28.468][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.470][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.471][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.472][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:28.473][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.475][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.476][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:28.477][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.478][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.479][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.480][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:28.483][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:28.484][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.487][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.488][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-15 16:30:28.490][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.492][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:30:28.493][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.495][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:28.496][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.497][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.499][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.500][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.501][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:30:28.502][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:28.504][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.505][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-15 16:30:28.506][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:28.508][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.509][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:28.510][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.511][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:30:28.512][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.514][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.515][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:28.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:28.518][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:28.519][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:28.526][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.527][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:28.528][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:28.530][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:28.531][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:28.532][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:28.534][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.655][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-15 16:30:28.657][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-15 16:30:28.658][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-15 16:30:28.660][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-15 16:30:28.662][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:30:28.663][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-15 16:30:28.665][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-15 16:30:28.667][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-15 16:30:28.668][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-15 16:30:28.670][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-15 16:30:28.672][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:30:28.673][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-15 16:30:28.675][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-15 16:30:28.677][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-15 16:30:28.684][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:30:28.685][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:30:28.687][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-15 16:30:28.689][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-15 16:30:28.690][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:30:28.692][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-15 16:30:28.694][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-15 16:30:28.696][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-15 16:30:28.698][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-15 16:30:28.700][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-15 16:30:28.702][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-15 16:30:28.704][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-15 16:30:28.705][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-15 16:30:28.707][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-15 16:30:28.709][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-15 16:30:28.710][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-15 16:30:28.712][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-15 16:30:28.713][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-15 16:30:28.715][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-15 16:30:28.717][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-15 16:30:28.718][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-15 16:30:28.720][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-15 16:30:28.722][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-15 16:30:28.723][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-15 16:30:28.725][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-15 16:30:28.728][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-15 16:30:28.730][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-15 16:30:28.733][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-15 16:30:28.736][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-15 16:30:28.738][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-15 16:30:28.741][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-15 16:30:28.744][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:30:28.746][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-15 16:30:28.749][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-15 16:30:28.752][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-15 16:30:28.754][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-15 16:30:28.757][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-15 16:30:28.760][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-15 16:30:28.762][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-15 16:30:28.765][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-15 16:30:28.768][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-15 16:30:28.770][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-15 16:30:28.773][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-15 16:30:28.776][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-15 16:30:28.779][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-15 16:30:28.781][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-15 16:30:28.784][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-15 16:30:28.787][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-15 16:30:28.789][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-15 16:30:28.792][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-15 16:30:28.795][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-15 16:30:28.797][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-15 16:30:28.800][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:30:28.803][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:30:28.805][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-15 16:30:28.808][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-15 16:30:28.811][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-15 16:30:28.814][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-15 16:30:28.816][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-15 16:30:28.819][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-15 16:30:28.822][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-15 16:30:28.824][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-15 16:30:28.827][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-15 16:30:28.830][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-15 16:30:28.832][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-15 16:30:28.835][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-15 16:30:28.838][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-15 16:30:28.840][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-15 16:30:28.843][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-15 16:30:28.846][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-15 16:30:28.851][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:30:28.853][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:30:28.855][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.868][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:28.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:28.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:28.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:28.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:28.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:28.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:28.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:30:29.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:29.090][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-15 16:30:29.094][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:29.097][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.099][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-15 16:30:29.100][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.102][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:29.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.107][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.109][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.111][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-15 16:30:29.113][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:29.114][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.116][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-15 16:30:29.118][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:29.120][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-15 16:30:29.120][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-15 16:30:29.122][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:29.124][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:29.126][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:30:29.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.130][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.132][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:29.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.138][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.140][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:29.140][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-15 16:30:29.142][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:29.144][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:29.146][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.148][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:29.150][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:30:29.153][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.155][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-15 16:30:29.157][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.159][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:29.161][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.163][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.165][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.167][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.169][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:29.171][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:29.174][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.176][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-15 16:30:29.178][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-15 16:30:29.180][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-15 16:30:29.182][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:29.184][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:29.186][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:30:29.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.192][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:29.194][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.197][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.199][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:29.199][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:29.201][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:29.203][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:29.205][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.207][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:29.209][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:30:29.213][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:29.215][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-15 16:30:29.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:29.221][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.223][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.225][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.227][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.229][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:29.231][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:29.233][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.235][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-15 16:30:29.237][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.239][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:30:29.242][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:29.244][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:30:29.244][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:30:29.244][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:30:29.246][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:30:29.248][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.249][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.251][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:29.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.255][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.257][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.259][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:29.259][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:29.259][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:30:29.261][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:29.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:29.265][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.267][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:30:29.270][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:30:29.273][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.275][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-15 16:30:29.277][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.279][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:30:29.290][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.292][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.294][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.296][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.299][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:30:29.301][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:30:29.303][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.305][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-15 16:30:29.307][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:30:29.309][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-15 16:30:29.309][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:30:29.311][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:30:29.313][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:30:29.315][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:30:29.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.321][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:30:29.323][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:30:29.324][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:30:29.326][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:30:29.328][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:30:29.328][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:30:29.328][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:30:29.330][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:30:29.332][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:30:29.334][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:30:29.336][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:30:29.339][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-15 16:30:29.342][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:30:29.345][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:30:29.348][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-15 16:30:29.350][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:30:29.354][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-15 16:30:29.367][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:30:29.369][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-06-15 16:30:29.372][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:30:29.375][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-15 16:30:29.378][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.380][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.383][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-06-15 16:30:29.386][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.388][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.552][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-06-15 16:30:29.562][biodb::testThat]
biodb.INFO [2024-06-15 16:30:29.565][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-15 16:30:29.567][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:29.568][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:29.595][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-06-15 16:30:29.597][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:29.601][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:29.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:29.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:29.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:29.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:29.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:29.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:29.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:29.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.636][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.647][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:29.649][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:29.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.655][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:29.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:29.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.663][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:29.665][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:29.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.681][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:29.683][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:29.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.688][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.696][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:29.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:29.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.703][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:29.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:29.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.709][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:29.710][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:29.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.717][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:29.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:29.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:29.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:29.793][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-06-15 16:30:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:29.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:29.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.801][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:29.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:29.822][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:29.865][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:29.867][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-06-15 16:30:29.869][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:30:29.895][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-15 16:30:29.897][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.900][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-15 16:30:29.919][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.921][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.924][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-15 16:30:29.926][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.928][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-06-15 16:30:29.930][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.932][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-15 16:30:29.953][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-06-15 16:30:29.955][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-06-15 16:30:29.958][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:29.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-06-15 16:30:29.967][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:30:30.015][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-06-15 16:30:30.018][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:30.020][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:30.023][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:30.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:30.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:30.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:30.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:30.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:30.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:30.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:30.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.087][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:30.089][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.095][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:30.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:30.176][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-06-15 16:30:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.186][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.208][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:30.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.216][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:30.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:30.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.488][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:30.490][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.496][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.541][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:30.542][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.548][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.592][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.594][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.598][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.630][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.637][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.641][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.675][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.676][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.715][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:30.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.721][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:30.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.737][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.742][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.753][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:30.755][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.782][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.784][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:30.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.800][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.803][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:30.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:30.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:30.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.838][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:30.840][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:30.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.857][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.859][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:30.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:30.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:30.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.895][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.897][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:30.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.913][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.915][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:30.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:30.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:30.954][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-06-15 16:30:30.957][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:30.959][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:30.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:30.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:30.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:30.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:30.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:30.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:30.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:31.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.020][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:31.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.030][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:31.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.038][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:31.050][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:31.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.059][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:31.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.067][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:31.070][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:31.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.077][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:31.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:31.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.085][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:31.087][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:31.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.095][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.103][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:31.105][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:31.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:31.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:31.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:31.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:31.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:31.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:31.216][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-06-15 16:30:31.220][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:31.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:31.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.227][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:31.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:31.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:31.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:31.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:31.268][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:31.271][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-06-15 16:30:31.337][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:31.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-06-15 16:30:31.363][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:30:31.366][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:30:31.377][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:31.380][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:31.382][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:30:31.384][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:30:31.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:31.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:31.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:31.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:31.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:31.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:31.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:31.415][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-06-15 16:30:31.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:30:31.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:30:31.450][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-06-15 16:30:32.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-06-15 16:30:34.046][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:30:34.051][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-06-15 16:30:34.068][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-06-15 16:30:34.073][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-06-15 16:30:34.077][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:30:34.078][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:34.080][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:34.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:34.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:34.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:34.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:34.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:34.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:34.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.149][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:34.151][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:34.244][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-06-15 16:30:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.266][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:34.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:34.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.297][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:34.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:34.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.425][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.634][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:34.636][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:34.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:34.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.655][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.661][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.671][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:34.672][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.676][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.698][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.703][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.708][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.709][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:34.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.752][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.754][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.782][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:34.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:34.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.807][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:34.809][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:34.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:34.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.839][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:34.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.863][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:34.866][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.921][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:34.923][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.928][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.953][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.955][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:34.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.971][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.973][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:34.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:34.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:34.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:34.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:34.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.007][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:35.009][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:35.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.024][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.027][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.039][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:35.041][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:35.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.052][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.054][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.066][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.067][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.118][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-06-15 16:30:35.120][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:35.122][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:35.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:35.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:35.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:35.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:35.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:35.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:35.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:35.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.189][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:35.191][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:35.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:35.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.204][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:35.205][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.214][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.224][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:35.226][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.246][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:35.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:35.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.253][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.268][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.270][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:35.405][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-06-15 16:30:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:35.439][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:35.440][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-06-15 16:30:35.441][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:35.443][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-06-15 16:30:35.445][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:30:35.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-06-15 16:30:35.453][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:35.456][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:35.458][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:35.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:35.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:35.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:35.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:35.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:35.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:35.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.494][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:35.495][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:35.555][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-06-15 16:30:35.557][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.562][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.569][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:35.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:35.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:35.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.779][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.788][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.805][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:35.807][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:35.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:35.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:35.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.863][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:35.866][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.872][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:35.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.897][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.906][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.915][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.924][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.926][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.984][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.986][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:35.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.043][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.046][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:36.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:36.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.110][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:36.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:36.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.151][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.162][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:36.164][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.184][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.186][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.196][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:36.198][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:36.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.225][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.227][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.241][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:36.243][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.257][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:36.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.273][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.275][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.289][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.291][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.337][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-06-15 16:30:36.340][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:36.342][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:36.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:36.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:36.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:36.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:36.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:36.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:36.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:36.386][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.403][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.405][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.418][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:36.420][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.423][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.427][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.435][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:36.437][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:36.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:36.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.451][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:36.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.461][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:36.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:36.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.468][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.470][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.480][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:36.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:36.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:36.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:36.574][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-06-15 16:30:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.585][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:36.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:36.615][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:36.616][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-06-15 16:30:36.618][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:36.621][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-06-15 16:30:36.624][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:30:36.626][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:30:36.628][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:36.630][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:36.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:30:36.634][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:30:36.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:36.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:36.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:36.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:36.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:36.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:36.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:36.709][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-06-15 16:30:36.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:30:36.737][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:30:36.760][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-06-15 16:30:39.226][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-06-15 16:30:40.677][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:30:40.681][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-06-15 16:30:40.687][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-06-15 16:30:40.698][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-06-15 16:30:40.705][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:30:40.707][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:40.710][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:40.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:40.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:40.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:40.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:40.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:40.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:40.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.760][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:40.762][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.765][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.768][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:40.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:40.845][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-06-15 16:30:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.861][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:40.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:40.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:40.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.877][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:40.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.885][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:40.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:40.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:40.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:40.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:40.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.097][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:41.099][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.105][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:41.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.137][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.153][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:41.155][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.159][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.198][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.200][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.236][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.237][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.262][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.284][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.286][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.331][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:41.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.338][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.360][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.393][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:41.395][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.421][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.424][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.437][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.439][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.469][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.471][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.481][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.482][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.492][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:41.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.504][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.505][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.515][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.516][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.564][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-06-15 16:30:41.566][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:41.568][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:41.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:41.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:41.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:41.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:41.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:41.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:41.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:41.636][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.642][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.656][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.658][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.675][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:41.677][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:41.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:41.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.693][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:41.695][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.698][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.703][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:41.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.708][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:41.710][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.717][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:41.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.722][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.724][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.726][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.736][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:41.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:41.814][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-06-15 16:30:41.816][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.822][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:41.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:41.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:41.845][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:41.846][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-06-15 16:30:41.847][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:41.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-06-15 16:30:41.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:30:41.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:30:41.854][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:41.855][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:41.857][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:30:41.858][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:30:41.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:41.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:41.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:41.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:41.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:41.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:41.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:41.883][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-06-15 16:30:41.888][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:30:41.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:30:41.892][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-06-15 16:30:43.254][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-06-15 16:30:44.530][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:30:44.533][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-06-15 16:30:44.540][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-06-15 16:30:44.545][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-06-15 16:30:44.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:30:44.551][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:44.554][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:44.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:44.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:44.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:44.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:44.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:44.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:44.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.605][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:44.606][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.608][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:44.671][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-06-15 16:30:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:44.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:44.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.832][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.865][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.870][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:44.871][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.875][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.891][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.896][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.906][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:44.908][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.928][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.934][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.944][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.945][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.980][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.982][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:44.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:44.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.001][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.016][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.017][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.036][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:45.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.052][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:45.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.057][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:45.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:45.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.091][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:45.092][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.113][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.115][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.125][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:45.127][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:45.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.149][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.150][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.160][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:45.162][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:45.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.174][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:45.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.186][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.188][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.198][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.200][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.232][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-06-15 16:30:45.234][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:45.237][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:45.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:45.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:45.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:45.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:45.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:45.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:45.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:45.275][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.297][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.299][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:45.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:45.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.308][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:45.310][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.314][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:45.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:45.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.319][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:45.321][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:45.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:45.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:45.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.331][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:45.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.337][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:45.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:45.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.342][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.344][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.350][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:45.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:45.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:45.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:45.433][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-06-15 16:30:45.437][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:45.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:45.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:45.472][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:45.474][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-06-15 16:30:45.476][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:45.479][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-06-15 16:30:45.481][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:30:45.484][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:30:45.486][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:45.488][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:45.490][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:30:45.491][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:30:45.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:45.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:45.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:45.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:45.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:45.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:45.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:45.518][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-06-15 16:30:45.522][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:30:45.524][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:30:45.527][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-06-15 16:30:46.626][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-06-15 16:30:47.711][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:30:47.715][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-06-15 16:30:47.725][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-06-15 16:30:47.730][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-06-15 16:30:47.735][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:30:47.738][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:47.741][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-06-15 16:30:47.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:47.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:47.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:47.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:47.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:47.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:47.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:47.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.805][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:47.807][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.814][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:47.886][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-06-15 16:30:47.889][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.897][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.903][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.924][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:47.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:47.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:47.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:47.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:47.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.065][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.091][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:48.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.100][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.114][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:48.116][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.155][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:48.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.161][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.176][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:48.178][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.183][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.200][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.206][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.217][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.218][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.260][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.262][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.264][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.304][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.306][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:48.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:48.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.353][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:48.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.396][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.411][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:48.413][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.418][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-06-15 16:30:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.441][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.444][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.456][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.458][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.468][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.480][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.482][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.495][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.497][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.512][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:48.514][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.518][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.528][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.531][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.545][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.547][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.584][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-06-15 16:30:48.587][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:30:48.590][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:48.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:48.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:48.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:48.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:48.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:48.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:48.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:48.628][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.645][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.646][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.661][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:48.663][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.677][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:48.680][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.683][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.687][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:48.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.695][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:48.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.714][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.716][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:48.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:48.821][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-06-15 16:30:48.824][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:48.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:48.865][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-06-15 16:30:48.867][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-06-15 16:30:48.869][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:30:48.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-06-15 16:30:48.875][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:30:48.877][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:30:48.879][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:48.882][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:30:48.884][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:30:48.886][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-06-15 16:30:48.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:48.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:48.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:48.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:48.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:48.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:48.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:30:48.911][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-06-15 16:30:48.915][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:30:48.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:30:48.919][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-06-15 16:30:50.268][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-06-15 16:30:51.586][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:30:51.589][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-06-15 16:30:51.596][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-06-15 16:30:51.602][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.INFO [2024-06-15 16:30:51.991][biodb::testThat]
biodb.INFO [2024-06-15 16:30:51.993][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-15 16:30:51.994][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:51.996][biodb::testThat]
biodb.DEBUG[2024-06-15 16:30:52.000][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-06-15 16:30:52.002][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-06-15 16:30:52.005][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-06-15 16:30:52.008][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-15 16:30:52.292][loadFileContents] Loaded 8 files from cache: [8]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-06-15 16:30:52.295][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:30:52.298][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-06-15 16:30:52.300][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-06-15 16:30:52.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:52.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:52.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:52.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:52.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:52.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:52.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:52.347][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.353][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.366][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.368][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.385][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.387][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.404][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.406][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.413][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.422][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.432][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.440][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.442][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:52.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:52.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:52.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:52.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:52.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:52.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:52.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:52.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.579][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.580][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.585][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.590][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.592][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.597][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.602][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.603][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.616][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.618][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.625][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.632][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.634][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:52.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:52.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:52.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:52.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:52.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:52.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:52.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:52.764][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.787][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.789][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.793][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:52.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.807][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.809][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.818][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:52.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.823][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.824][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.840][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.841][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:52.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.858][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.860][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:52.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:52.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:52.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:52.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:52.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:52.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:52.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:52.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:52.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:53.007][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.026][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.028][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.043][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.045][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.052][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.059][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.061][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.076][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.093][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.095][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:53.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:53.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:53.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:53.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:53.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:53.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:53.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:53.245][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.251][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.266][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.268][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.278][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.286][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.288][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.298][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.305][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.307][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.317][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.326][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.331][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.347][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.348][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:53.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:53.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:53.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:53.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:53.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:53.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:53.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:53.476][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.480][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.491][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.493][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.507][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.508][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.511][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.519][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.520][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.531][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.534][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.537][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.546][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.548][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.556][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:53.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:53.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:53.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:53.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:53.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:53.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:53.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:53.633][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.646][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.647][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.658][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.659][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.661][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.664][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.669][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.671][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.673][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.681][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.693][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.694][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:53.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:53.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:30:53.773][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:30:53.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:30:53.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:30:53.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:30:53.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:30:53.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:30:53.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.814][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.816][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-15 16:30:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-15 16:30:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.829][ef$get] Asked field names are: location.
biodb.TRACE[2024-06-15 16:30:53.830][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-06-15 16:30:53.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.836][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.838][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.841][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-06-15 16:30:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-06-15 16:30:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.850][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-06-15 16:30:53.852][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.857][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.859][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-06-15 16:30:53.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-06-15 16:30:53.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:53.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:30:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:30:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:54.046][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-06-15 16:30:54.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.093][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:30:54.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:30:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:30:54.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:30:54.234][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.235][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-15 16:30:54.236][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.238][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:54.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.246][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:54.248][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-06-15 16:30:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:54.308][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-06-15 16:30:54.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-15 16:30:54.320][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:30:54.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-06-15 16:30:54.324][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:30:54.339][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-06-15 16:30:54.342][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-06-15 16:30:54.377][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.379][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-15 16:30:54.381][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.382][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:30:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:30:54.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:54.476][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-06-15 16:30:54.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:30:54.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-06-15 16:30:54.488][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:30:54.492][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-06-15 16:30:54.528][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.530][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-15 16:30:54.532][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.534][biodb::testThat]
biodb.TRACE[2024-06-15 16:30:54.556][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.565][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:30:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:30:54.595][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-06-15 16:30:54.597][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.611][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:54.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:54.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.649][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:30:54.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:30:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:30:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:30:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:54.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:30:54.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:30:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:30:54.705][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.707][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-15 16:30:54.709][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.711][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.733][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.735][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-15 16:30:54.737][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.739][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.756][biodb::testThat]
biodb.INFO [2024-06-15 16:30:54.758][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-15 16:30:54.760][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:30:54.762][biodb::testThat]
biodb.DEBUG[2024-06-15 16:30:54.770][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-06-15 16:30:57.683][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-06-15 16:31:00.727][biodb::testThat]
biodb.INFO [2024-06-15 16:31:00.729][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-15 16:31:00.731][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:00.733][biodb::testThat]
biodb.INFO [2024-06-15 16:31:00.747][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-15 16:31:00.750][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-06-15 16:31:00.752][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-06-15 16:31:00.754][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-06-15 16:31:00.767][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-06-15 16:31:00.769][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-15 16:31:00.771][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:00.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:00.774][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:00.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:00.778][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-15 16:31:00.787][biodb::testContext]
biodb.INFO [2024-06-15 16:31:00.789][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:31:00.790][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-06-15 16:31:00.792][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:31:00.794][biodb::testContext]
biodb.INFO [2024-06-15 16:31:00.799][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:31:00.803][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-15 16:31:00.811][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:31:00.813][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-15 16:31:00.815][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.822][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-15 16:31:00.824][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.831][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-15 16:31:00.832][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.839][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-15 16:31:00.841][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-15 16:31:00.843][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-15 16:31:00.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.849][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-15 16:31:00.851][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-15 16:31:00.853][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.860][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-15 16:31:00.862][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-15 16:31:00.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.869][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-15 16:31:00.871][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-15 16:31:00.873][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-15 16:31:00.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.881][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-15 16:31:00.883][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.891][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-15 16:31:00.893][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-15 16:31:00.895][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-15 16:31:00.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.902][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:31:00.904][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-15 16:31:00.907][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-15 16:31:00.909][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-15 16:31:00.911][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-15 16:31:00.913][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-15 16:31:00.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.921][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-15 16:31:00.923][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-15 16:31:00.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.930][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-15 16:31:00.933][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-15 16:31:00.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.954][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-15 16:31:00.956][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-15 16:31:00.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.964][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-15 16:31:00.966][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-15 16:31:00.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.973][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-15 16:31:00.975][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-15 16:31:00.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.982][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:31:00.984][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-15 16:31:00.990][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-15 16:31:00.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:00.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:00.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:00.998][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-15 16:31:00.999][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-15 16:31:01.001][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-15 16:31:01.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.009][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-15 16:31:01.012][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.015][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-15 16:31:01.017][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.019][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.023][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.025][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.029][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:31:01.031][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.033][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.036][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-15 16:31:01.038][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.040][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.042][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.044][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:31:01.044][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:31:01.044][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:31:01.044][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:31:01.044][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:31:01.046][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:31:01.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.051][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.056][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.058][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.061][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.063][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.065][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.067][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-15 16:31:01.071][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.073][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:31:01.075][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.076][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.080][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.082][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.084][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.086][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:31:01.088][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.090][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.091][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-15 16:31:01.092][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.094][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.095][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.097][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:31:01.097][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:31:01.097][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:31:01.097][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:31:01.097][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:31:01.099][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:31:01.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.102][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.103][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.104][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.108][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.110][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.112][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.113][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.114][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-15 16:31:01.116][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.118][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-15 16:31:01.119][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.120][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.121][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.123][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.124][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.125][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.126][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:31:01.128][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.129][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.130][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-15 16:31:01.132][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.133][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.134][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.136][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:31:01.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.148][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.150][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.152][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.153][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.155][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.157][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-15 16:31:01.160][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.163][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:31:01.164][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.165][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.167][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.168][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.169][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.170][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.171][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:31:01.173][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.174][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.175][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-15 16:31:01.177][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.178][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.179][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.180][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.182][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:31:01.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.186][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.190][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.194][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.196][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.198][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.200][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.202][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.205][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:31:01.207][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.239][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.257][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.363][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-15 16:31:01.366][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-15 16:31:01.368][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-15 16:31:01.371][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-15 16:31:01.373][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:31:01.376][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-15 16:31:01.378][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-15 16:31:01.381][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-15 16:31:01.383][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-15 16:31:01.386][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-15 16:31:01.388][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:31:01.391][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-15 16:31:01.393][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-15 16:31:01.396][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-15 16:31:01.398][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:31:01.401][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:31:01.403][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-15 16:31:01.406][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-15 16:31:01.408][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:31:01.410][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-15 16:31:01.413][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-15 16:31:01.415][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-15 16:31:01.417][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-15 16:31:01.420][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-15 16:31:01.422][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-15 16:31:01.424][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-15 16:31:01.427][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-15 16:31:01.429][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-15 16:31:01.431][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-15 16:31:01.434][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-15 16:31:01.436][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-15 16:31:01.438][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-15 16:31:01.441][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-15 16:31:01.443][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-15 16:31:01.445][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-15 16:31:01.448][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-15 16:31:01.450][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-15 16:31:01.452][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-15 16:31:01.455][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-15 16:31:01.457][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-15 16:31:01.459][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-15 16:31:01.462][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-15 16:31:01.464][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-15 16:31:01.467][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-15 16:31:01.469][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-15 16:31:01.471][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:31:01.474][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-15 16:31:01.476][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-15 16:31:01.478][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-15 16:31:01.480][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-15 16:31:01.482][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-15 16:31:01.484][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-15 16:31:01.485][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-15 16:31:01.487][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-15 16:31:01.488][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-15 16:31:01.490][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-15 16:31:01.492][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-15 16:31:01.493][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-15 16:31:01.495][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-15 16:31:01.497][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-15 16:31:01.498][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-15 16:31:01.500][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-15 16:31:01.501][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-15 16:31:01.503][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-15 16:31:01.505][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-15 16:31:01.507][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-15 16:31:01.508][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:31:01.510][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:31:01.512][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-15 16:31:01.514][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-15 16:31:01.515][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-15 16:31:01.517][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-15 16:31:01.519][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-15 16:31:01.520][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-15 16:31:01.522][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-15 16:31:01.524][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-15 16:31:01.526][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-15 16:31:01.529][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-15 16:31:01.532][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-15 16:31:01.535][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-15 16:31:01.537][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-15 16:31:01.540][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-15 16:31:01.543][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-15 16:31:01.546][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-15 16:31:01.551][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:31:01.563][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:31:01.565][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.570][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.777][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:31:01.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:01.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:01.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:01.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:01.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:01.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:01.799][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-15 16:31:01.802][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:31:01.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.808][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-15 16:31:01.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.812][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.816][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.817][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.819][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.821][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-15 16:31:01.823][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.825][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.826][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-15 16:31:01.828][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.830][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-15 16:31:01.830][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-15 16:31:01.832][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.834][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.835][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:31:01.837][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.839][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.840][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.842][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.844][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.845][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.847][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:31:01.847][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-15 16:31:01.849][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.851][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.852][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.854][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.856][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:31:01.859][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.861][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-15 16:31:01.863][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.865][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.867][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.868][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.870][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.872][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.874][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:31:01.876][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.877][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.879][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-15 16:31:01.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-15 16:31:01.883][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-15 16:31:01.885][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.886][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:31:01.888][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:31:01.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.892][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.893][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.897][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.898][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.900][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:01.900][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:31:01.902][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.904][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.905][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.907][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.909][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:31:01.913][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.914][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-15 16:31:01.916][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.918][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.920][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.922][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.924][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.925][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.927][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:31:01.929][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.931][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.933][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-15 16:31:01.935][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.936][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:31:01.939][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.940][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:31:01.940][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:31:01.940][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:31:01.942][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:31:01.944][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.945][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.947][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:01.949][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:01.952][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.954][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:01.954][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:31:01.954][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:31:01.956][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:01.958][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:01.959][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.961][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:31:01.963][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:31:01.966][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.968][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-15 16:31:01.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.972][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:31:01.974][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.975][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.977][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.979][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:31:01.981][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:31:01.982][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:31:01.984][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:01.986][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-15 16:31:01.988][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:31:01.990][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-15 16:31:01.990][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:31:01.991][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:31:01.993][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:31:01.995][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:31:01.997][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:01.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:02.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:31:02.002][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:31:02.003][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:31:02.005][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:31:02.007][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:02.007][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:31:02.007][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:31:02.009][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:31:02.010][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:31:02.012][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:31:02.014][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:31:02.016][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-15 16:31:02.019][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:31:02.021][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:31:02.024][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-15 16:31:02.026][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:31:02.029][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-15 16:31:02.037][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:31:02.038][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-06-15 16:31:02.040][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:31:02.042][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-15 16:31:02.043][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:31:02.045][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:31:02.047][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-06-15 16:31:02.048][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:31:02.049][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:31:02.051][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:31:02.057][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-06-15 16:31:02.064][biodb::testThat]
biodb.INFO [2024-06-15 16:31:02.065][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-15 16:31:02.067][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:02.068][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:02.083][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-06-15 16:31:02.086][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:02.091][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:02.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:02.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:02.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:02.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:02.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:02.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:02.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:02.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.142][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.161][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.176][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.178][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.192][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.194][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.207][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.208][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.218][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:02.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.223][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:02.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.455][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:02.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:02.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:02.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:02.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:02.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:02.492][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:02.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.507][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:02.509][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:02.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:02.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.520][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:02.522][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:02.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.531][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:02.532][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:02.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:02.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:02.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.542][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:02.543][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:02.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.545][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:02.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:02.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.555][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:02.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:02.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:02.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:02.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:02.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:02.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:02.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.638][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:02.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:02.719][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-06-15 16:31:02.723][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:02.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:02.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:02.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:02.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:02.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.769][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:02.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.936][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.952][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:02.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.959][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:02.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:02.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:02.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:02.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.007][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:03.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:03.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.129][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.131][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.181][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.233][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.235][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.239][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.288][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.291][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.339][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.392][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.394][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.447][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.449][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.500][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.556][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.641][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.662][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:03.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:03.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.674][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.675][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.689][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.690][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.722][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.725][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.750][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.753][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:03.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.769][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:03.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:03.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.788][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:03.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:03.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.805][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.807][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:03.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.820][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:03.822][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:03.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.832][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:03.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.844][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:03.846][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:03.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.858][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:03.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:03.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.869][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.871][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:03.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.881][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.882][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:03.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.905][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-06-15 16:31:03.907][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:03.909][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:03.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:03.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:03.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:03.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:03.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:03.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:03.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:03.931][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:03.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:03.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:03.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.947][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.949][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:03.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.963][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.965][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:03.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.976][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.977][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.988][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.990][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:03.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.001][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.015][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:04.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.023][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:04.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.031][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.033][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.037][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.059][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.061][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.074][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.077][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.091][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:04.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.108][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.110][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.125][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.127][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:04.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:04.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:04.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:04.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.213][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:04.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:04.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:04.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:04.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:04.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:04.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:04.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:04.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:04.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:04.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:04.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:04.346][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-06-15 16:31:04.350][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:04.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:04.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:04.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:04.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:04.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:04.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:04.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:04.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:04.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.567][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:04.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:04.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:04.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.670][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.673][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.677][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:04.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.723][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.724][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.778][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.780][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.783][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.829][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.831][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.873][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.874][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.876][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:04.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:04.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:04.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:04.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:04.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:04.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.020][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.065][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.067][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.121][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.123][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.173][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.174][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.225][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.227][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.269][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.277][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.279][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.308][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.330][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.332][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.367][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.370][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.386][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.400][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.402][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.405][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.416][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:05.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:05.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:05.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:05.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.469][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:05.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:05.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:05.488][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:05.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:05.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:05.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.511][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.523][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.525][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.534][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.536][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.538][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:05.552][biodb::testThat]
biodb.INFO [2024-06-15 16:31:05.554][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-15 16:31:05.556][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:05.558][biodb::testThat]
biodb.DEBUG[2024-06-15 16:31:05.563][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-06-15 16:31:05.566][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:05.571][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-06-15 16:31:05.574][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-06-15 16:31:05.609][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-06-15 16:31:05.612][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:05.614][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:05.616][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:05.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:05.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:05.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:05.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:05.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:05.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:05.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:05.638][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.644][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.653][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.655][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.670][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.675][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.686][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.687][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.690][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.697][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.699][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.709][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.710][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.721][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:05.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:05.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.724][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.727][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:05.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:05.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:05.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:05.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:05.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:05.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:05.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:05.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:05.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.757][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.758][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:05.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.769][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:05.771][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:05.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.776][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:05.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.783][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:05.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:05.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:05.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.807][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.823][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.824][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.828][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:05.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:05.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:05.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:05.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:05.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.893][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:05.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:05.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:05.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:05.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:05.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:05.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:05.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:05.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:05.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:05.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:05.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:05.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:05.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:05.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:05.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.029][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.031][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.043][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.045][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.060][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.073][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.075][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.087][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:06.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:06.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.095][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:06.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:06.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:06.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:06.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:06.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:06.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:06.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:06.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.146][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:06.148][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:06.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:06.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:06.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.160][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:06.162][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:06.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:06.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:06.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.175][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:06.177][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:06.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.191][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:06.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:06.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:06.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:06.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:06.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:06.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:06.404][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-06-15 16:31:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:31:06.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:31:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:31:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:31:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:31:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:31:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:31:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:31:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:31:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:31:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:31:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:31:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:06.474][biodb::testThat]
biodb.INFO [2024-06-15 16:31:06.475][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-15 16:31:06.476][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:06.478][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:06.483][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.489][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:06.492][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-06-15 16:31:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:06.546][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-06-15 16:31:06.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-15 16:31:06.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:06.564][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-15 16:31:06.566][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:06.582][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-15 16:31:06.585][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-06-15 16:31:06.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:06.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:06.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:06.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:06.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.627][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:06.639][biodb::testThat]
biodb.INFO [2024-06-15 16:31:06.640][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-15 16:31:06.642][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:06.643][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:06.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-15 16:31:06.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:06.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-15 16:31:06.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:06.817][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-06-15 16:31:06.847][biodb::testThat]
biodb.INFO [2024-06-15 16:31:06.848][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-15 16:31:06.849][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:06.851][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:06.868][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.894][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:31:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:31:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:31:06.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:31:06.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:06.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:31:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:06.980][biodb::testThat]
biodb.INFO [2024-06-15 16:31:06.983][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-15 16:31:06.984][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:06.986][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.000][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.002][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-15 16:31:07.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:07.004][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.017][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.019][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-15 16:31:07.020][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:07.021][biodb::testThat]
biodb.DEBUG[2024-06-15 16:31:07.028][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-06-15 16:31:07.137][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-06-15 16:31:07.289][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.291][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-15 16:31:07.293][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:07.294][biodb::testThat]
biodb.DEBUG[2024-06-15 16:31:07.382][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-06-15 16:31:07.456][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:07.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:07.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:07.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:07.461][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:07.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:07.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:07.465][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:07.467][biodb::testThat]
biodb.INFO [2024-06-15 16:31:07.468][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-06-15 16:31:07.469][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:07.471][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:07.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-15 16:31:07.952][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:07.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-15 16:31:07.957][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:07.959][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-06-15 16:31:08.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-06-15 16:31:08.041][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-06-15 16:31:08.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.048][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-06-15 16:31:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:08.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:08.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:08.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:08.120][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:08.124][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.135][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:08.156][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:08.160][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.161][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-06-15 16:31:08.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.191][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-06-15 16:31:08.671][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:08.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-06-15 16:31:08.681][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.698][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-06-15 16:31:08.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:08.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.751][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-06-15 16:31:08.753][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.769][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-06-15 16:31:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:08.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:08.856][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:08.862][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.865][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-06-15 16:31:08.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.884][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-06-15 16:31:08.916][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:08.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.925][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-06-15 16:31:08.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:08.944][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-06-15 16:31:08.976][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:08.982][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:08.984][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-06-15 16:31:08.987][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:09.003][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-06-15 16:31:09.048][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-06-15 16:31:09.054][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:09.056][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-06-15 16:31:09.059][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:09.064][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-06-15 16:31:09.102][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:09.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:09.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:09.121][biodb::testThat]
biodb.INFO [2024-06-15 16:31:09.123][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-06-15 16:31:09.125][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:09.127][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:09.132][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:09.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:09.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:09.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:09.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:09.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:09.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:09.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:09.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:09.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:09.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:09.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:09.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:09.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:09.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:09.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:09.243][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:09.246][private$loadEntries] Creating entries from ids [3]: "171384817, 171380427, 171378033".
biodb.DEBUG[2024-06-15 16:31:09.249][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:31:09.252][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171384817, 171380427, 171378033".
biodb.TRACE[2024-06-15 16:31:09.255][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-15 16:31:09.302][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171384817.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380427.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171378033.xml".
biodb.DEBUG[2024-06-15 16:31:09.304][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:09.307][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:31:09.309][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:09.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:09.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:09.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:09.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:09.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:09.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:09.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:09.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.349][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.351][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.364][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.366][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.382][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.385][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.392][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.393][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.402][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.404][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.414][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:09.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:09.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.422][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:09.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:09.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.442][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:09.444][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:09.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:09.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:09.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:09.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:09.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:09.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:09.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.493][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:09.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:09.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:09.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:09.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.510][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:09.512][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:09.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.524][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.525][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.534][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.536][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.539][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.548][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:09.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.614][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:09.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.634][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:09.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:09.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:09.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:09.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:09.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:09.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:09.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:09.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:09.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.746][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.755][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.757][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.769][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.771][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.775][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:09.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.784][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.786][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.798][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.800][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.828][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:09.830][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:09.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.842][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:09.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:09.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.847][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:09.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:09.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:09.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:09.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:09.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:09.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.886][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:09.888][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:09.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.897][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:09.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:09.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.912][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.914][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.929][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.931][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:09.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:09.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:09.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:09.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.985][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:09.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:09.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:10.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.020][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:10.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:10.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:10.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:10.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:10.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:10.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:10.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:10.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:10.115][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:10.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:10.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.133][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.134][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.137][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.144][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.145][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.154][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.171][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.173][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.186][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.188][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.201][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:10.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:10.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.215][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:10.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:10.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:10.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:10.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.229][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:10.230][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:10.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:10.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.245][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:10.246][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:10.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:10.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:10.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.258][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:10.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:10.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.265][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:10.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.272][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:10.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:10.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:10.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.286][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:10.288][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:10.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:10.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.300][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:10.302][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:10.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:10.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:10.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:10.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:10.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:10.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:10.526][self$createEntryFromContent] Accession numbers: 171384817, 171380427, 171378033.
biodb.DEBUG[2024-06-15 16:31:10.528][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:10.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:10.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:10.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:10.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:10.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:10.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:10.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:10.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.559][private$selectFields]
biodb.TRACE[2024-06-15 16:31:10.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:10.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:10.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.571][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.581][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.583][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.599][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.601][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:10.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:10.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:10.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:10.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:10.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:10.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:10.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:10.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.670][private$selectFields]
biodb.TRACE[2024-06-15 16:31:10.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:10.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:10.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.684][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.691][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.694][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:10.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-15 16:31:10.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:10.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:10.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:10.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:10.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:10.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:10.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.758][private$selectFields]
biodb.TRACE[2024-06-15 16:31:10.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:10.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:10.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.767][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.769][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.774][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:10.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.779][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:10.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:10.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:10.801][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:10.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:10.805][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:10.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:10.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:10.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:10.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:10.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:10.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:10.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:10.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:10.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:10.851][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:10.854][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:10.927][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:10.929][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:10.932][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:10.935][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:10.999][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:11.002][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-06-15 16:31:11.009][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-06-15 16:31:11.014][private$loadEntries] Creating entries from ids [3]: "171385155, 171385152, 171385150".
biodb.DEBUG[2024-06-15 16:31:11.016][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:31:11.019][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171385155, 171385152, 171385150".
biodb.TRACE[2024-06-15 16:31:11.022][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:11.024][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:11.026][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:11.028][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:11.030][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:11.031][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:11.033][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-15 16:31:11.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML".
biodb.DEBUG[2024-06-15 16:31:11.038][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:11.039][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:11.041][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML".
biodb.TRACE[2024-06-15 16:31:11.164][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171385155,171385152,171385150/XML).
biodb.TRACE[2024-06-15 16:31:11.282][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385155.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385152.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171385150.xml"
biodb.DEBUG[2024-06-15 16:31:11.289][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:11.292][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:31:11.294][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:11.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:11.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:11.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:11.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:11.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:11.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:11.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:11.320][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.335][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.349][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.363][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.365][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.380][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.394][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.401][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:11.403][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:11.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.408][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:11.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:11.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.414][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:11.415][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.419][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:11.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:11.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:11.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:11.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.443][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.452][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:11.454][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:11.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:11.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.469][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:11.471][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:11.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:11.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:11.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.487][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.488][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.490][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.498][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.500][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:11.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:11.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:11.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.608][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:11.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:11.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:11.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:11.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:11.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:11.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:11.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:11.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:11.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.710][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.713][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:11.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:11.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.723][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.737][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.739][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.752][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.753][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.757][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.766][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.768][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.772][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.780][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.794][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:11.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:11.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:11.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:11.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.808][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:11.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:11.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.813][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:11.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:11.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:11.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.827][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:11.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:11.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:11.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.851][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:11.853][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:11.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.865][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:11.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:11.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.871][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:11.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:11.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.880][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.882][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.894][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.896][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:11.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:11.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:11.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:11.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:11.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:11.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:11.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:12.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:12.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:12.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:12.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:12.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:12.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:12.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:12.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.115][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.117][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.132][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.134][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.161][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.162][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.186][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.187][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.199][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:12.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.207][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:12.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.214][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:12.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:12.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:12.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:12.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:12.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:12.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.251][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:12.253][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:12.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:12.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:12.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.265][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:12.266][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:12.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:12.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.276][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:12.278][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:12.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.289][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:12.291][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:12.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:12.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:12.500][self$createEntryFromContent] Accession numbers: 171385155, 171385152, 171385150.
biodb.DEBUG[2024-06-15 16:31:12.531][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:12.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:12.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:12.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:12.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:12.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:12.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:12.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.630][private$selectFields]
biodb.TRACE[2024-06-15 16:31:12.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:12.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:12.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.645][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.659][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.673][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:12.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:12.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:12.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:12.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:12.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:12.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:12.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:12.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.727][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.728][private$selectFields]
biodb.TRACE[2024-06-15 16:31:12.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:12.730][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:12.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.744][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.750][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:12.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:12.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:12.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:12.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:12.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:12.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:12.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:12.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.794][private$selectFields]
biodb.TRACE[2024-06-15 16:31:12.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:12.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:12.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.803][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.809][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.815][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:12.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:12.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.848][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:12.849][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:12.850][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:12.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:12.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:12.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:12.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:12.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:12.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:12.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:12.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:13.010][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:13.015][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:13.018][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:13.020][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:13.238][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:13.242][private$loadEntries] Creating entries from ids [2]: "130032437, 171372625".
biodb.DEBUG[2024-06-15 16:31:13.245][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:13.248][cch$loadFileContent] Trying to load 2 files from cache: [2]: "130032437, 171372625".
biodb.TRACE[2024-06-15 16:31:13.251][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-06-15 16:31:13.372][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130032437.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171372625.xml".
biodb.DEBUG[2024-06-15 16:31:13.375][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:13.377][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:13.380][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:13.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:13.385][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:13.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:13.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:13.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:13.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:13.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:13.409][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.426][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.428][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.445][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.459][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.461][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.475][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.477][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.491][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.493][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.506][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:13.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:13.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.512][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:13.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.523][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:13.525][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:13.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.529][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:13.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.550][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:13.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:13.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.556][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:13.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.584][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:13.586][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:13.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.601][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:13.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:13.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.606][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.617][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:13.619][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:13.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.623][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.633][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:13.636][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:13.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:13.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.672][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:13.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.693][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:13.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:13.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:13.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:13.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:13.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:13.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:13.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:13.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:13.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:13.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.843][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:13.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:13.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.854][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.856][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.868][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.870][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.873][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.883][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.885][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.898][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.900][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.915][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.928][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:13.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:13.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.933][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:13.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:13.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.943][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:13.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:13.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:13.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:13.959][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:13.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:13.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.981][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:13.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:13.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:13.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:13.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:13.992][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:13.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:13.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:13.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:14.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:14.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:14.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.019][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:14.020][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:14.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:14.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:14.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:14.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:14.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:14.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:14.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.061][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:14.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.077][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:14.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:14.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:14.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:14.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:14.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:14.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:14.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:14.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:14.193][self$createEntryFromContent] Accession numbers: 130032437, 171372625.
biodb.DEBUG[2024-06-15 16:31:14.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:14.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:14.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:14.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:14.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:14.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:14.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:14.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.222][private$selectFields]
biodb.TRACE[2024-06-15 16:31:14.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:14.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:14.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.242][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.250][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:14.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:14.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:14.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:14.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:14.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:14.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:14.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:14.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:14.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.328][private$selectFields]
biodb.TRACE[2024-06-15 16:31:14.330][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:14.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:14.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.337][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.340][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.354][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.360][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:14.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:14.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:14.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:14.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:14.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:14.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:14.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.415][private$selectFields]
biodb.TRACE[2024-06-15 16:31:14.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:14.418][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:14.420][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.424][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.441][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:14.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.451][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:14.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:14.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-15 16:31:14.479][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:14.481][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:14.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:14.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:14.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:14.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:14.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:14.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:14.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:14.518][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:14.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:14.526][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:14.530][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:14.597][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:14.599][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:14.602][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:14.605][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:14.665][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:14.670][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-06-15 16:31:14.679][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-06-15 16:31:14.684][private$loadEntries] Creating entries from ids [3]: "171384639, 171374155, 171374057".
biodb.DEBUG[2024-06-15 16:31:14.686][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:31:14.689][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171384639, 171374155, 171374057".
biodb.TRACE[2024-06-15 16:31:14.691][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:14.694][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:14.695][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:14.697][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:14.699][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:14.700][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:14.727][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-15 16:31:14.730][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML".
biodb.DEBUG[2024-06-15 16:31:14.733][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:14.734][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:14.736][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML".
biodb.TRACE[2024-06-15 16:31:14.926][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171384639,171374155,171374057/XML).
biodb.TRACE[2024-06-15 16:31:15.094][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171384639.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374155.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374057.xml"
biodb.DEBUG[2024-06-15 16:31:15.101][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:15.103][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:31:15.106][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:15.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:15.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:15.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:15.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:15.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:15.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:15.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:15.131][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.141][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.143][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.155][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.157][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.169][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.171][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.181][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.182][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.186][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.195][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.198][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.212][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:15.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:15.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:15.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.228][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:15.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:15.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:15.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:15.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.273][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:15.275][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:15.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:15.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.288][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:15.290][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:15.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.303][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.304][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.317][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.319][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.332][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.353][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.398][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:15.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.420][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:15.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:15.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:15.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:15.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:15.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:15.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:15.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:15.512][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.523][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.524][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.527][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.534][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.535][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.548][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.550][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.563][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.578][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.580][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.584][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.594][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:15.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:15.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.603][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:15.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.611][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:15.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:15.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:15.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:15.630][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:15.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.634][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.674][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:15.676][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:15.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.681][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:15.683][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:15.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:15.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.696][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.698][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:15.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.711][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.713][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.726][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.769][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.790][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:15.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:15.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:15.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:15.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:15.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:15.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:15.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:15.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:15.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:15.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.931][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.945][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.946][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:15.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.959][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.961][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.964][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.974][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.976][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.991][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:15.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.004][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:16.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:16.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:16.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:16.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:16.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.034][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:16.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:16.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:16.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.064][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:16.066][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:16.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.071][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:16.073][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.087][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.104][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.106][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.145][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:16.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.168][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:16.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.227][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:16.361][self$createEntryFromContent] Accession numbers: 171384639, 171374155, 171374057.
biodb.DEBUG[2024-06-15 16:31:16.363][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:16.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:16.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:16.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:16.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:16.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:16.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:16.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.398][private$selectFields]
biodb.TRACE[2024-06-15 16:31:16.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:16.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:16.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.420][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:16.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:16.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:16.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:16.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:16.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:16.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:16.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:16.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.490][private$selectFields]
biodb.TRACE[2024-06-15 16:31:16.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:16.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:16.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.502][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.509][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.512][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.521][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:16.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-15 16:31:16.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:16.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:16.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:16.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:16.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:16.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:16.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.572][private$selectFields]
biodb.TRACE[2024-06-15 16:31:16.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:16.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:16.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.588][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:16.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.595][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:16.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:16.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-15 16:31:16.617][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:16.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:16.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:16.645][biodb::testThat]
biodb.INFO [2024-06-15 16:31:16.647][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-06-15 16:31:16.648][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:16.650][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:16.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:16.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:16.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:16.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:16.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:16.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:16.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:16.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:16.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:16.733][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-06-15 16:31:16.735][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:16.748][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-06-15 16:31:16.751][private$loadEntries] Creating entries from ids [1]: "171370721".
biodb.DEBUG[2024-06-15 16:31:16.753][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:31:16.755][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171370721".
biodb.TRACE[2024-06-15 16:31:16.757][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:16.773][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171370721.xml".
biodb.DEBUG[2024-06-15 16:31:16.775][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:16.777][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:16.780][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:16.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:16.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:16.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:16.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:16.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:16.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:16.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:16.806][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.822][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:16.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.871][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.872][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:16.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.882][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.883][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.904][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.905][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.915][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:16.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:16.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.920][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:16.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:16.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:16.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.929][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:16.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:16.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:16.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:16.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:16.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:16.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:16.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.957][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:16.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:16.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:16.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:16.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.967][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:16.969][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:16.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:16.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.980][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.981][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:16.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:16.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.996][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:16.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:16.999][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.030][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:17.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:17.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:17.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:17.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:17.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:17.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:17.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:17.191][self$createEntryFromContent] Accession numbers: 171370721.
biodb.DEBUG[2024-06-15 16:31:17.193][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:17.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:17.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:17.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:17.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:17.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:17.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:17.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.223][private$selectFields]
biodb.TRACE[2024-06-15 16:31:17.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:17.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:17.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.234][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.238][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.239][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.240][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.245][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-15 16:31:17.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:17.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:17.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:17.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:17.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:17.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:17.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.292][private$selectFields]
biodb.TRACE[2024-06-15 16:31:17.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:17.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:17.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.311][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.315][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.322][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-15 16:31:17.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:17.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:17.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:17.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:17.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:17.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:17.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.376][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.378][private$selectFields]
biodb.TRACE[2024-06-15 16:31:17.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:17.380][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:17.382][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.407][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.411][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:17.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.420][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:17.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171370721].
biodb.DEBUG[2024-06-15 16:31:17.449][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:17.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:17.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:17.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:17.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:17.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:17.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:17.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:17.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:17.487][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:17.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:17.496][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:17.499][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:17.565][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:17.567][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:17.570][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:17.573][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:17.621][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:17.626][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-06-15 16:31:17.634][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-06-15 16:31:17.639][private$loadEntries] Creating entries from ids [2]: "171341956, 171226048".
biodb.DEBUG[2024-06-15 16:31:17.641][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:17.644][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171341956, 171226048".
biodb.TRACE[2024-06-15 16:31:17.647][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:17.649][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:17.652][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:17.654][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:17.655][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:17.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:17.659][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-15 16:31:17.663][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML".
biodb.DEBUG[2024-06-15 16:31:17.666][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:17.668][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:17.670][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML".
biodb.TRACE[2024-06-15 16:31:17.802][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171226048/XML).
biodb.TRACE[2024-06-15 16:31:17.907][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171341956.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171226048.xml"
biodb.DEBUG[2024-06-15 16:31:17.913][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:17.916][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:17.919][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:17.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:17.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:17.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:17.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:17.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:17.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:17.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:17.946][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:17.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:17.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.957][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.959][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:17.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.971][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.973][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.988][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.990][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:17.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:17.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.004][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.006][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.019][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.020][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.030][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:18.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:18.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:18.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:18.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:18.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:18.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:18.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.052][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:18.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:18.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:18.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:18.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.067][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.068][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.078][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:18.079][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:18.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.083][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:18.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.091][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:18.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:18.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:18.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.107][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.109][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.122][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.130][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:18.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:18.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:18.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:18.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:18.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:18.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:18.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:18.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:18.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:18.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:18.338][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.354][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.357][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.372][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.385][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.405][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.407][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.421][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.423][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.438][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.440][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.450][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:18.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:18.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.456][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:18.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:18.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:18.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:18.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:18.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:18.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:18.480][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:18.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:18.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.512][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:18.515][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:18.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:18.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.530][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:18.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:18.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:18.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.547][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.549][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.564][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.567][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:18.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:18.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:18.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:18.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.657][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:18.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.683][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:18.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:18.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:18.809][self$createEntryFromContent] Accession numbers: 171341956, 171226048.
biodb.DEBUG[2024-06-15 16:31:18.812][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:18.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:18.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:18.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:18.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:18.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:18.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:18.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:18.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.855][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.857][private$selectFields]
biodb.TRACE[2024-06-15 16:31:18.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:18.861][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:18.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.871][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.883][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.885][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.893][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:18.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:18.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:18.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:18.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:18.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:18.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:18.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.959][private$selectFields]
biodb.TRACE[2024-06-15 16:31:18.961][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:18.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:18.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.983][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.985][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:18.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:18.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:18.994][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:18.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:18.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-06-15 16:31:19.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:19.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:19.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:19.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:19.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:19.042][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:19.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:19.076][private$selectFields]
biodb.TRACE[2024-06-15 16:31:19.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:19.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:19.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:19.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.101][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:19.103][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:19.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.114][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-06-15 16:31:19.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:19.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:19.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:19.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:19.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:19.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:19.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:19.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:19.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:19.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:19.236][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:19.240][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:19.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-06-15 16:31:19.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:19.255][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-06-15 16:31:19.258][private$loadEntries] Creating entries from ids [3]: "171364948, 171326566, 171268275".
biodb.DEBUG[2024-06-15 16:31:19.259][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:31:19.261][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364948, 171326566, 171268275".
biodb.TRACE[2024-06-15 16:31:19.263][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-06-15 16:31:19.301][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364948.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326566.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171268275.xml".
biodb.DEBUG[2024-06-15 16:31:19.302][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:19.304][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:31:19.306][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:19.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:19.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:19.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:19.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:19.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:19.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:19.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:19.326][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.330][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.348][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.349][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.362][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.364][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.380][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.396][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.399][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.409][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:19.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.417][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.425][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:19.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:19.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:19.443][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:19.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:19.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.466][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:19.468][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:19.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.481][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:19.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:19.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:19.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.496][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.498][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.501][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.511][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.512][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.516][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.525][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.547][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:19.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:19.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:19.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:19.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:19.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:19.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:19.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:19.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:19.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:19.728][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:19.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.741][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.743][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.766][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.768][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.781][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.782][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:19.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.795][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.797][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.810][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:19.812][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.818][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:19.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.825][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:19.827][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:19.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.832][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:19.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:19.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:19.842][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:19.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:19.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:19.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:19.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.867][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:19.869][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:19.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.875][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.882][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:19.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:19.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.887][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:19.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.897][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.899][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:19.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.912][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.914][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:19.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:19.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:19.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:19.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:19.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:20.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:20.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:20.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:20.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:20.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:20.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:20.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:20.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:20.114][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:20.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:20.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.136][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.139][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.149][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.151][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.164][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.195][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.204][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:20.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:20.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:20.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:20.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:20.222][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:20.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:20.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:20.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:20.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:20.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:20.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:20.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:20.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.268][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:20.270][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.285][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:20.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:20.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:20.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.302][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:20.304][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:20.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.319][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:20.321][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:20.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:20.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:20.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.397][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:20.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:20.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:20.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.437][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:20.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:20.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:20.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:20.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:20.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:20.583][self$createEntryFromContent] Accession numbers: 171364948, 171326566, 171268275.
biodb.DEBUG[2024-06-15 16:31:20.588][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:20.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:20.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:20.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:20.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:20.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:20.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:20.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:20.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.633][private$selectFields]
biodb.TRACE[2024-06-15 16:31:20.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:20.637][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:20.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.657][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.666][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-06-15 16:31:20.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:20.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:20.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:20.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:20.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:20.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:20.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:20.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.735][private$selectFields]
biodb.TRACE[2024-06-15 16:31:20.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:20.738][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:20.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.761][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.770][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-06-15 16:31:20.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:20.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:20.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:20.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:20.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:20.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:20.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.838][private$selectFields]
biodb.TRACE[2024-06-15 16:31:20.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:20.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:20.843][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.857][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.861][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:20.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.870][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:20.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171268275].
biodb.DEBUG[2024-06-15 16:31:20.895][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:20.897][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:20.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:20.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:20.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:20.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:20.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:20.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:20.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:20.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:20.936][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:20.938][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:20.941][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:21.008][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:21.010][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:21.013][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:21.016][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:21.065][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:21.069][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-06-15 16:31:21.077][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-06-15 16:31:21.082][private$loadEntries] Creating entries from ids [1]: "171219496".
biodb.DEBUG[2024-06-15 16:31:21.085][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:31:21.088][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171219496".
biodb.TRACE[2024-06-15 16:31:21.091][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:31:21.093][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:21.095][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:21.098][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:21.100][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:21.102][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:21.104][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-15 16:31:21.108][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML".
biodb.DEBUG[2024-06-15 16:31:21.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:21.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:21.129][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML".
biodb.TRACE[2024-06-15 16:31:21.221][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171219496/XML).
biodb.TRACE[2024-06-15 16:31:21.353][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171219496.xml"
biodb.DEBUG[2024-06-15 16:31:21.358][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:21.361][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:21.364][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:21.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:21.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:21.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:21.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:21.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:21.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:21.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:21.397][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.413][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.415][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.428][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.430][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.443][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.445][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.458][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.463][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.473][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.475][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.488][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:21.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:21.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.496][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:21.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:21.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.508][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.518][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:21.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:21.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:21.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:21.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:21.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:21.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.548][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:21.549][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:21.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:21.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.563][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:21.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:21.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.569][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:21.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:21.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.580][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:21.582][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:21.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:21.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:21.598][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:21.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.602][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:21.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:21.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:21.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:21.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:21.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:21.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:21.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:21.804][self$createEntryFromContent] Accession numbers: 171219496.
biodb.DEBUG[2024-06-15 16:31:21.806][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:21.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:21.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:21.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:21.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:21.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:21.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:21.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.847][private$selectFields]
biodb.TRACE[2024-06-15 16:31:21.849][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:21.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:21.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.871][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.880][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:21.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:21.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:21.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:21.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:21.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:21.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:21.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:21.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:21.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.943][private$selectFields]
biodb.TRACE[2024-06-15 16:31:21.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:21.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:21.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.956][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.967][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:21.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:21.976][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:21.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:21.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-06-15 16:31:22.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.056][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.089][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-06-15 16:31:22.111][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:22.113][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:22.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:22.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:22.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:22.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:22.154][biodb::testThat]
biodb.INFO [2024-06-15 16:31:22.156][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-06-15 16:31:22.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:22.160][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:22.166][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:22.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:22.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.171][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:22.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:22.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:22.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:22.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:22.268][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:22.274][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:22.276][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:22.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:22.282][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:22.286][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:22.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.327][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.329][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.330][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.350][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.358][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.383][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:22.385][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.419][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.420][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.421][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.428][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.435][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.442][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.464][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-15 16:31:22.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.494][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.495][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.499][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.512][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.514][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.516][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.525][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:22.544][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:22.545][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:22.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:22.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:22.578][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:22.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-15 16:31:22.584][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:22.598][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-15 16:31:22.601][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:22.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.639][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.652][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.659][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.662][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.669][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.671][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:22.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.741][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.742][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.746][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.754][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.762][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.766][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.768][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.773][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.774][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:22.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:22.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:22.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:22.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.821][private$selectFields]
biodb.TRACE[2024-06-15 16:31:22.822][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:22.823][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:22.824][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.826][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.827][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.831][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.832][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.836][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.837][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:22.838][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.842][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.843][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:22.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:22.870][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:22.872][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:22.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:22.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:22.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:22.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:22.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:23.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:23.019][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:23.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:23.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:23.027][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:23.030][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:23.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.071][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.073][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.091][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.098][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:23.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.166][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.167][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.168][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.170][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.184][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.193][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:23.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.260][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.263][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.279][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.288][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-15 16:31:23.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:23.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:23.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:23.347][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:23.352][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:23.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-15 16:31:23.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:23.361][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-15 16:31:23.364][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:23.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.405][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.411][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.429][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.436][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.438][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:23.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.508][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.535][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.544][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-15 16:31:23.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:23.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.608][private$selectFields]
biodb.TRACE[2024-06-15 16:31:23.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:23.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:23.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.627][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.631][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:23.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.640][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:23.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.665][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-15 16:31:23.667][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:23.669][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:23.758][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.766][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:23.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:23.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.780][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:23.782][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:23.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.787][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.793][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:23.796][biodb::testThat]
biodb.INFO [2024-06-15 16:31:23.798][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-06-15 16:31:23.800][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:23.801][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:23.807][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:23.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:23.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:23.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:23.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:23.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:23.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:23.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:23.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:23.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:23.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:23.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:23.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:23.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:23.929][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:23.931][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:23.934][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:24.007][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:24.009][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:24.013][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:24.016][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:24.077][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:24.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-06-15 16:31:24.087][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-06-15 16:31:24.092][private$loadEntries] Creating entries from ids [2]: "93507146, 171393041".
biodb.DEBUG[2024-06-15 16:31:24.094][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:24.097][cch$loadFileContent] Trying to load 2 files from cache: [2]: "93507146, 171393041".
biodb.TRACE[2024-06-15 16:31:24.100][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:24.102][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:24.104][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:24.105][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:24.107][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:24.108][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:24.110][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-15 16:31:24.112][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML".
biodb.DEBUG[2024-06-15 16:31:24.116][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:24.118][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:24.120][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML".
biodb.TRACE[2024-06-15 16:31:24.288][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/93507146,171393041/XML).
biodb.TRACE[2024-06-15 16:31:24.385][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93507146.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171393041.xml"
biodb.DEBUG[2024-06-15 16:31:24.390][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:24.393][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:24.395][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:24.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:24.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:24.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:24.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:24.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:24.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:24.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:24.423][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.434][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.436][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.446][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.447][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.456][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.457][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.467][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.468][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.477][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.479][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.488][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:24.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:24.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.496][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:24.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:24.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:24.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.508][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.517][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:24.519][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:24.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.546][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:24.548][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:24.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:24.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.561][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:24.563][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:24.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.566][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:24.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.576][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.578][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.581][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.591][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.592][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.596][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.626][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:24.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:24.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:24.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:24.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:24.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:24.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:24.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:24.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:24.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:24.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:24.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:24.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:24.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:24.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.779][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:24.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.786][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.787][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.790][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.800][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.801][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.804][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:24.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.814][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.815][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.830][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.834][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:24.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.843][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.845][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:24.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.858][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:24.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:24.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.863][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.866][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:24.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:24.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.888][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:24.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:24.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:24.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:24.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:24.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:24.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:24.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:24.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:24.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.933][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:24.935][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:24.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.939][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.942][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:24.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:24.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.950][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:24.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:24.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.957][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.959][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:24.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.968][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.970][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:24.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:24.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.990][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:24.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:24.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:24.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:24.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:25.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:25.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.006][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:25.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:25.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:25.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:25.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:25.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:25.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.024][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:25.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:25.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:25.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:25.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.046][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:25.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:25.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:25.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:25.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:25.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:25.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:25.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:25.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:25.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:25.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:25.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:25.194][self$createEntryFromContent] Accession numbers: 93507146, 171393041.
biodb.DEBUG[2024-06-15 16:31:25.196][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:25.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.241][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.264][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.266][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.268][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-15 16:31:25.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.342][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.364][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.373][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393041].
biodb.DEBUG[2024-06-15 16:31:25.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.435][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.448][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.459][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.466][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.468][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:25.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:25.491][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:25.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:25.522][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:25.526][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:25.527][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:25.530][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:25.593][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:25.595][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:25.598][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:25.601][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:25.655][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:25.659][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-06-15 16:31:25.666][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-06-15 16:31:25.671][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:25.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.707][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.716][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.724][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.729][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.730][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:25.752][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.783][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.800][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.806][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:25.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.850][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.851][private$selectFields]
biodb.TRACE[2024-06-15 16:31:25.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:25.853][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:25.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.868][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:25.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.875][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:25.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:25.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:25.893][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:25.894][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:25.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:25.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:25.951][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:25.954][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:25.957][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:25.961][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:25.965][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:25.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:25.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:25.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:25.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:25.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:25.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:25.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:25.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:25.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.009][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.032][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.041][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.065][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:26.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.104][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.106][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.136][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-15 16:31:26.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.210][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.211][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.225][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.238][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.261][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:26.263][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:26.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:26.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:26.294][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:26.298][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:26.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-15 16:31:26.302][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:26.305][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-15 16:31:26.308][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:26.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:26.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.356][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.376][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.380][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.382][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.390][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.416][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:26.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:26.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.460][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.465][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.481][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.483][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.485][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.487][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.495][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:26.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:26.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.562][private$selectFields]
biodb.TRACE[2024-06-15 16:31:26.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:26.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:26.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.577][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.589][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:26.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:26.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:26.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:26.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:26.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:26.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:26.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:26.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:26.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:26.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:26.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:26.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:26.725][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:26.727][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:26.731][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:26.801][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:26.803][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:26.806][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:26.809][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:26.860][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:26.865][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-06-15 16:31:26.874][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-06-15 16:31:26.880][private$loadEntries] Creating entries from ids [1]: "171380756".
biodb.DEBUG[2024-06-15 16:31:26.882][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:31:26.886][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171380756".
biodb.TRACE[2024-06-15 16:31:26.889][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:31:26.891][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:26.893][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:26.895][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:26.898][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:26.899][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:26.901][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-15 16:31:26.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML".
biodb.DEBUG[2024-06-15 16:31:26.911][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:26.913][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:26.916][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML".
biodb.TRACE[2024-06-15 16:31:27.083][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380756/XML).
biodb.TRACE[2024-06-15 16:31:27.205][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380756.xml"
biodb.DEBUG[2024-06-15 16:31:27.209][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:27.212][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:27.215][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:27.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:27.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:27.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:27.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:27.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:27.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:27.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:27.243][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.245][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.276][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.279][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.283][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.296][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.298][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.302][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.312][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.314][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.330][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.344][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.346][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.362][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:27.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:27.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.372][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:27.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.381][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:27.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.389][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:27.399][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:27.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:27.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:27.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:27.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:27.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.428][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:27.430][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:27.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.435][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:27.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.446][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:27.448][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:27.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.462][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:27.464][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:27.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.477][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:27.479][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:27.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.492][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:27.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:27.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:27.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.568][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:27.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.600][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:27.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:27.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:27.731][self$createEntryFromContent] Accession numbers: 171380756.
biodb.DEBUG[2024-06-15 16:31:27.734][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:27.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:27.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:27.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:27.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:27.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:27.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:27.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:27.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.776][private$selectFields]
biodb.TRACE[2024-06-15 16:31:27.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:27.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:27.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.788][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.808][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:27.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:27.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:27.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:27.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:27.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:27.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:27.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:27.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:27.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.872][private$selectFields]
biodb.TRACE[2024-06-15 16:31:27.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:27.876][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:27.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.895][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.899][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.904][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:27.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:27.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:27.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:27.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:27.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:27.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:27.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:27.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.981][private$selectFields]
biodb.TRACE[2024-06-15 16:31:27.983][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:27.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:27.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:27.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:27.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:27.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:27.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:28.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:28.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.013][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.014][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:28.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-15 16:31:28.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:28.042][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:28.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:28.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:28.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:28.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:28.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:28.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:28.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:28.077][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:28.082][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:28.084][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:28.088][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:28.161][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:28.163][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:28.165][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:28.168][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:28.226][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:28.231][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-06-15 16:31:28.239][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-06-15 16:31:28.244][private$loadEntries] Creating entries from ids [3]: "171394923, 171394084, 171394067".
biodb.DEBUG[2024-06-15 16:31:28.246][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-06-15 16:31:28.250][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171394923, 171394084, 171394067".
biodb.TRACE[2024-06-15 16:31:28.253][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:28.256][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:28.258][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:28.260][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:28.263][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:28.265][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:28.267][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-06-15 16:31:28.271][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML".
biodb.DEBUG[2024-06-15 16:31:28.276][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:28.278][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:28.281][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML".
biodb.TRACE[2024-06-15 16:31:28.389][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171394923,171394084,171394067/XML).
biodb.TRACE[2024-06-15 16:31:28.515][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394923.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394084.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171394067.xml"
biodb.DEBUG[2024-06-15 16:31:28.523][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:28.526][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-06-15 16:31:28.528][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:28.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:28.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:28.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:28.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:28.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:28.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:28.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:28.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.583][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.588][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.598][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.600][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.614][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.620][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.634][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.637][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.650][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.654][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.664][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:28.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:28.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.670][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:28.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:28.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.680][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:28.682][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:28.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:28.697][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:28.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:28.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:28.712][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:28.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.725][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:28.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:28.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.730][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.733][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:28.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:28.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.740][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:28.742][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:28.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.745][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:28.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:28.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.755][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:28.757][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:28.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:28.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:28.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.771][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:28.774][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:28.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.853][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:28.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:28.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:28.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:28.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:28.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:28.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:28.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:28.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:28.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:28.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:28.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:28.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.012][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.014][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.023][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.025][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.027][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.035][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.036][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.048][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.061][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.063][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.076][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:29.078][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:29.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.082][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:29.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:29.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:29.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.108][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:29.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:29.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.142][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:29.144][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:29.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.150][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:29.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.159][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:29.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:29.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:29.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.175][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.178][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.193][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.195][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.210][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.235][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:29.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:29.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:29.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:29.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:29.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:29.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:29.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:29.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:29.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:29.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:29.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.416][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.426][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.428][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.431][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.441][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.443][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.446][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.456][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.462][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.471][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.473][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.486][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.488][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.492][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.502][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:29.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:29.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:29.518][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:29.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:29.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:29.534][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:29.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.537][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:29.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.548][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.551][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:29.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.562][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:29.564][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:29.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.571][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:29.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.585][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:29.587][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:29.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.591][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:29.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.610][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.612][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:29.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.632][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.634][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.638][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:29.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.681][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:29.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:29.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.726][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:29.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:29.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.748][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:29.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:29.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:29.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.794][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:29.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:29.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:29.947][self$createEntryFromContent] Accession numbers: 171394923, 171394084, 171394067.
biodb.DEBUG[2024-06-15 16:31:29.949][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:29.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:29.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:29.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:29.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:29.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:29.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:29.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:29.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:29.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:29.990][private$selectFields]
biodb.TRACE[2024-06-15 16:31:29.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:29.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:29.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:29.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:29.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.012][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.014][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.024][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-15 16:31:30.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.093][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.095][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.118][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.128][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-15 16:31:30.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.199][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.224][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.234][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-15 16:31:30.262][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:30.264][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:30.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:30.343][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:30.349][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:30.354][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-06-15 16:31:30.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:30.361][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-06-15 16:31:30.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:30.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.419][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.448][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.452][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.455][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.458][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-15 16:31:30.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.529][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.531][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.549][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.553][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.560][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.562][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393041].
biodb.DEBUG[2024-06-15 16:31:30.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.590][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.621][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.624][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.643][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.651][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.653][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:30.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:30.683][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:30.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:30.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:30.731][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:30.734][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-06-15 16:31:30.736][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:30.741][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-06-15 16:31:30.744][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:30.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.786][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.787][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.789][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.791][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.806][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.810][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.812][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.817][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.841][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:30.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.871][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.872][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.876][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.890][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.894][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.903][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.929][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:30.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:30.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:30.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:30.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:30.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:30.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:30.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:30.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.970][private$selectFields]
biodb.TRACE[2024-06-15 16:31:30.972][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:30.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:30.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:30.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:30.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.994][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:30.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:30.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.002][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:31.041][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:31.043][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:31.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:31.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:31.125][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:31.128][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:31.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:31.135][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:31.139][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:31.142][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.179][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.181][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.208][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.219][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:31.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.295][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.297][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.320][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.330][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.357][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380427].
biodb.DEBUG[2024-06-15 16:31:31.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.401][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.414][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.422][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.426][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.436][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.463][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:31.465][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:31.467][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:31.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:31.502][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:31.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:31.511][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-15 16:31:31.514][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:31.517][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-15 16:31:31.520][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:31.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.561][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.563][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.566][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.573][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.580][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.596][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385155].
biodb.DEBUG[2024-06-15 16:31:31.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.672][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.674][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.694][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.698][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.700][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.702][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.706][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.708][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.736][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385152].
biodb.DEBUG[2024-06-15 16:31:31.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.791][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.807][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.816][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:31.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171385150].
biodb.DEBUG[2024-06-15 16:31:31.842][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:31.844][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:31.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:31.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:31.932][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:31.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-06-15 16:31:31.938][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:31.942][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-06-15 16:31:31.946][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:31.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:31.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:31.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:31.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:31.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:31.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:31.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:31.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:31.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:31.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:31.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:31.992][private$selectFields]
biodb.TRACE[2024-06-15 16:31:31.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:31.996][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:31.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.018][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.020][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.022][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384817].
biodb.DEBUG[2024-06-15 16:31:32.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:32.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.091][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.093][private$selectFields]
biodb.TRACE[2024-06-15 16:31:32.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:32.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:32.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.116][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.124][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:32.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.186][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.188][private$selectFields]
biodb.TRACE[2024-06-15 16:31:32.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:32.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:32.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.211][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.220][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-15 16:31:32.246][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:32.248][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:32.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:32.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:32.287][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:32.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-06-15 16:31:32.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:32.296][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-06-15 16:31:32.299][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:32.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.305][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.340][private$selectFields]
biodb.TRACE[2024-06-15 16:31:32.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:32.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:32.345][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.363][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.365][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.367][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-15 16:31:32.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.464][private$selectFields]
biodb.TRACE[2024-06-15 16:31:32.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:32.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:32.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.477][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.485][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.487][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.489][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.497][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.499][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.524][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-15 16:31:32.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.563][private$selectFields]
biodb.TRACE[2024-06-15 16:31:32.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:32.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:32.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.582][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.586][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:32.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.594][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:32.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.613][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-15 16:31:32.614][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:32.616][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:32.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:32.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:32.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:32.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:32.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:32.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:32.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:32.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:32.757][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:32.759][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:32.762][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:32.828][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:32.830][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:32.833][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:32.835][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:32.888][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:32.892][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-06-15 16:31:32.900][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-06-15 16:31:32.906][private$loadEntries] Creating entries from ids [2]: "171395207, 171393712".
biodb.DEBUG[2024-06-15 16:31:32.908][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:32.912][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171395207, 171393712".
biodb.TRACE[2024-06-15 16:31:32.914][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:32.917][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:32.919][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:32.921][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:32.923][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:32.925][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:32.926][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-15 16:31:32.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML".
biodb.DEBUG[2024-06-15 16:31:32.933][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:32.935][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:32.938][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML".
biodb.TRACE[2024-06-15 16:31:33.037][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171395207,171393712/XML).
biodb.TRACE[2024-06-15 16:31:33.158][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171395207.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171393712.xml"
biodb.DEBUG[2024-06-15 16:31:33.164][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:33.167][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:33.170][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:33.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:33.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:33.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:33.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:33.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:33.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:33.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:33.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.215][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.216][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.226][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.227][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.236][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.238][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.241][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.250][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.252][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.266][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.267][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.281][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:33.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.288][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:33.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.296][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:33.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:33.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:33.311][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:33.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.339][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:33.340][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:33.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.346][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:33.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:33.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.361][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.363][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:33.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:33.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:33.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:33.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:33.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:33.579][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:33.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:33.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:33.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:33.589][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.594][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.608][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.610][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.629][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.631][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.635][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.645][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.647][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.662][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.666][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.675][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.677][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.690][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:33.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:33.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.697][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:33.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.708][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:33.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:33.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.715][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.718][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:33.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:33.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.733][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.762][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:33.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:33.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.769][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.772][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:33.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.780][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:33.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:33.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.787][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:33.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.798][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.801][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.816][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.818][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.821][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:33.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.832][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:33.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.856][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:33.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:33.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.894][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:33.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:33.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.909][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:33.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:33.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:33.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:33.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:34.009][self$createEntryFromContent] Accession numbers: 171395207, 171393712.
biodb.DEBUG[2024-06-15 16:31:34.011][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:34.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:34.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:34.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:34.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:34.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:34.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:34.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:34.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.050][private$selectFields]
biodb.TRACE[2024-06-15 16:31:34.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:34.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:34.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.057][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.066][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.073][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.075][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.082][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:34.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-15 16:31:34.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:34.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:34.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:34.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:34.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:34.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:34.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.144][private$selectFields]
biodb.TRACE[2024-06-15 16:31:34.146][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:34.147][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:34.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.165][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.167][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.175][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171395207].
biodb.DEBUG[2024-06-15 16:31:34.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:34.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:34.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:34.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:34.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:34.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:34.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:34.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.239][private$selectFields]
biodb.TRACE[2024-06-15 16:31:34.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:34.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:34.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.259][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.263][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:34.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.271][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.273][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:34.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:34.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393712].
biodb.DEBUG[2024-06-15 16:31:34.301][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:34.303][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:34.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:34.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:34.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:34.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:34.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:34.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:34.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:34.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:34.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:34.344][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:34.348][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:34.417][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:34.419][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:34.422][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:34.425][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:34.476][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:34.480][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-06-15 16:31:34.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-06-15 16:31:34.492][private$loadEntries] Creating entries from ids [2]: "171374855, 171374844".
biodb.DEBUG[2024-06-15 16:31:34.493][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-06-15 16:31:34.495][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171374855, 171374844".
biodb.TRACE[2024-06-15 16:31:34.497][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-06-15 16:31:34.499][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:34.500][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:34.501][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:34.503][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:34.504][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:34.505][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-06-15 16:31:34.508][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML".
biodb.DEBUG[2024-06-15 16:31:34.511][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:34.512][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:34.514][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML".
biodb.TRACE[2024-06-15 16:31:34.626][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171374855,171374844/XML).
biodb.TRACE[2024-06-15 16:31:34.735][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374855.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171374844.xml"
biodb.DEBUG[2024-06-15 16:31:34.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:34.744][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-06-15 16:31:34.747][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:34.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:34.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:34.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:34.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:34.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:34.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:34.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:34.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:34.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:34.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:34.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.795][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:34.797][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:34.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:34.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.812][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:34.814][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:34.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:34.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.828][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.830][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.841][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:34.842][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:34.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.852][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:34.853][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:34.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:34.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.862][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:34.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.868][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:34.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.873][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:34.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:34.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:34.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:34.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.884][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:34.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:34.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:34.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:34.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:34.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.898][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.906][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:34.907][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:34.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.911][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:34.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.916][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:34.918][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:34.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:34.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:34.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.928][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:34.945][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:34.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.949][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.960][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:34.962][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:34.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:34.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.975][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:34.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:34.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:34.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.010][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:35.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.043][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:35.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:35.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:35.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.152][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.154][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.166][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.168][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.183][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.196][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.198][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.201][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.212][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.214][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.227][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:35.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:35.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.235][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.242][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:35.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:35.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:35.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:35.258][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:35.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:35.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:35.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.285][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:35.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:35.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.291][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:35.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:35.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.301][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:35.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:35.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:35.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:35.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.312][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:35.313][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:35.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.316][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:35.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.338][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:35.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.353][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:35.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:35.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:35.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:35.517][self$createEntryFromContent] Accession numbers: 171374855, 171374844.
biodb.DEBUG[2024-06-15 16:31:35.520][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:35.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:35.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.564][private$selectFields]
biodb.TRACE[2024-06-15 16:31:35.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:35.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:35.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.590][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.598][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.600][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:35.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.669][private$selectFields]
biodb.TRACE[2024-06-15 16:31:35.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:35.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:35.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.681][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.690][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.692][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-06-15 16:31:35.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.763][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.765][private$selectFields]
biodb.TRACE[2024-06-15 16:31:35.766][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:35.768][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:35.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.788][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.796][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:35.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-06-15 16:31:35.819][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:35.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:35.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:35.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:35.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:35.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:35.905][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:35.908][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:35.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:35.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:35.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:35.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:35.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:35.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:35.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:35.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.952][private$selectFields]
biodb.TRACE[2024-06-15 16:31:35.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:35.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:35.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.973][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.975][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:35.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:35.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:35.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:36.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.049][private$selectFields]
biodb.TRACE[2024-06-15 16:31:36.050][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:36.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:36.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.072][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:36.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.177][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.180][private$selectFields]
biodb.TRACE[2024-06-15 16:31:36.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:36.185][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:36.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.207][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.216][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-15 16:31:36.245][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:36.247][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:36.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:36.281][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:36.287][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:36.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-15 16:31:36.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:36.295][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-15 16:31:36.299][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:36.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.304][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.342][private$selectFields]
biodb.TRACE[2024-06-15 16:31:36.343][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:36.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:36.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.360][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.370][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:36.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:36.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.435][private$selectFields]
biodb.TRACE[2024-06-15 16:31:36.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:36.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:36.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.445][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.463][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.470][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.472][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-15 16:31:36.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:36.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.549][private$selectFields]
biodb.TRACE[2024-06-15 16:31:36.550][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:36.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:36.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.571][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:36.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:36.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:36.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-15 16:31:36.604][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:36.605][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:36.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:36.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:36.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:36.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:36.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:36.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:36.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:36.678][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:36.684][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:36.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:36.689][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:36.755][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:36.758][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:36.761][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:36.764][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:36.820][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:36.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-06-15 16:31:36.833][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-06-15 16:31:36.838][private$loadEntries] Creating entries from ids [1]: "171380739".
biodb.DEBUG[2024-06-15 16:31:36.841][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:31:36.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171380739".
biodb.TRACE[2024-06-15 16:31:36.848][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-15 16:31:36.850][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-15 16:31:36.852][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:31:36.854][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:31:36.857][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-06-15 16:31:36.859][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-06-15 16:31:36.861][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-15 16:31:36.865][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML".
biodb.DEBUG[2024-06-15 16:31:36.869][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:36.871][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:36.875][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML".
biodb.TRACE[2024-06-15 16:31:36.963][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171380739/XML).
biodb.TRACE[2024-06-15 16:31:37.072][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171380739.xml"
biodb.DEBUG[2024-06-15 16:31:37.077][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-06-15 16:31:37.079][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:31:37.082][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-06-15 16:31:37.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:37.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:37.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:37.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:37.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:37.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:37.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:37.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.125][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.126][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.140][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.143][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.176][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.193][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.207][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.224][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:37.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:37.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-06-15 16:31:37.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.241][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:37.243][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:37.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:37.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:37.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:37.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:37.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:37.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:37.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.279][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:37.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.289][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:37.290][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:37.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.294][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.303][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:37.304][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:37.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-06-15 16:31:37.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.317][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:37.319][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:37.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.321][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:37.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.330][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:37.331][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:37.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.344][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-06-15 16:31:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-06-15 16:31:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:37.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-06-15 16:31:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:37.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-06-15 16:31:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:37.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-06-15 16:31:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:37.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:37.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:37.523][self$createEntryFromContent] Accession numbers: 171380739.
biodb.DEBUG[2024-06-15 16:31:37.524][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:37.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:37.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:37.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:37.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:37.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:37.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:37.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.566][private$selectFields]
biodb.TRACE[2024-06-15 16:31:37.568][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:37.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:37.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.588][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.590][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.626][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:37.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:37.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:37.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:37.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:37.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:37.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:37.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.669][private$selectFields]
biodb.TRACE[2024-06-15 16:31:37.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:37.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:37.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.682][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.689][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.691][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.692][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.694][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.699][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-15 16:31:37.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:37.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:37.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:37.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:37.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:37.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:37.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:37.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.764][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.766][private$selectFields]
biodb.TRACE[2024-06-15 16:31:37.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:37.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:37.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.776][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.780][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.799][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.802][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.805][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:37.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.816][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:37.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:37.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-06-15 16:31:37.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:37.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:37.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:37.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:37.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:37.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:37.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:37.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:37.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:37.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:37.893][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-06-15 16:31:37.895][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-06-15 16:31:37.899][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-06-15 16:31:37.967][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-06-15 16:31:37.969][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-06-15 16:31:37.972][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-06-15 16:31:37.976][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-06-15 16:31:38.035][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-06-15 16:31:38.039][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-06-15 16:31:38.046][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-06-15 16:31:38.051][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:38.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.096][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.101][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.107][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.125][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.135][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-15 16:31:38.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.201][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.203][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.225][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-15 16:31:38.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.288][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.290][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.301][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.309][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.312][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.319][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.345][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-15 16:31:38.347][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:38.349][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:38.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:38.431][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:38.437][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:38.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-06-15 16:31:38.442][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:38.446][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-06-15 16:31:38.450][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:38.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.491][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.505][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.513][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.517][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.524][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.526][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [93507146].
biodb.DEBUG[2024-06-15 16:31:38.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.594][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.622][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.625][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.630][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171395207].
biodb.DEBUG[2024-06-15 16:31:38.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.688][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.690][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.694][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.695][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.705][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.716][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.723][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171393712].
biodb.DEBUG[2024-06-15 16:31:38.749][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:38.751][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:38.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:38.784][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:38.789][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:38.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-06-15 16:31:38.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:38.798][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-06-15 16:31:38.801][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:38.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.818][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.842][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.844][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.864][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.869][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.871][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.889][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:38.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:38.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:38.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:38.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:38.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.928][private$selectFields]
biodb.TRACE[2024-06-15 16:31:38.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:38.932][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:38.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.951][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:38.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.960][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:38.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374855].
biodb.DEBUG[2024-06-15 16:31:38.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:38.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:38.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:38.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.022][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.024][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.033][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.047][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.056][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374844].
biodb.DEBUG[2024-06-15 16:31:39.082][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:39.083][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:39.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:39.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:39.165][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:39.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:39.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:39.174][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:39.177][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:39.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.220][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.248][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.258][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.267][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:39.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.334][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.336][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.362][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171378033].
biodb.DEBUG[2024-06-15 16:31:39.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.438][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.440][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.443][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.450][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.469][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171372625].
biodb.DEBUG[2024-06-15 16:31:39.494][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:39.496][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:39.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:39.532][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:39.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:39.540][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-15 16:31:39.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:39.546][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-15 16:31:39.549][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:39.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.589][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.591][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.594][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.603][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.610][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.614][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.621][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.623][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.647][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171384639].
biodb.DEBUG[2024-06-15 16:31:39.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.689][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.692][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.701][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.709][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.712][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374155].
biodb.DEBUG[2024-06-15 16:31:39.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.789][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.812][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.813][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.819][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.821][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171374057].
biodb.DEBUG[2024-06-15 16:31:39.847][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:39.849][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:39.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:39.937][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:39.942][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:39.945][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-06-15 16:31:39.948][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:39.952][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-06-15 16:31:39.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:39.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:39.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:39.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:39.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:39.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:39.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:39.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.984][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.985][private$selectFields]
biodb.TRACE[2024-06-15 16:31:39.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:39.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:39.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:39.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:39.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:39.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:39.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.002][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.033][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130032437].
biodb.DEBUG[2024-06-15 16:31:40.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.062][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.064][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.065][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:40.066][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.080][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.104][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380756].
biodb.DEBUG[2024-06-15 16:31:40.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.132][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:40.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.137][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.146][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.153][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.162][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171380739].
biodb.DEBUG[2024-06-15 16:31:40.187][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:40.188][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:40.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:40.225][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:40.229][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:40.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-06-15 16:31:40.233][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:40.235][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-06-15 16:31:40.238][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:40.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.266][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.267][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:40.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.277][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.281][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.284][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.289][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.291][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.314][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394923].
biodb.DEBUG[2024-06-15 16:31:40.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.350][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:40.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.369][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.373][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.383][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394084].
biodb.DEBUG[2024-06-15 16:31:40.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.446][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:40.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.482][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-06-15 16:31:40.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.491][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-06-15 16:31:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.516][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171394067].
biodb.DEBUG[2024-06-15 16:31:40.517][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:40.519][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:31:40.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:31:40.582][biodb::testThat]
biodb.INFO [2024-06-15 16:31:40.584][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-06-15 16:31:40.586][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:31:40.588][biodb::testThat]
biodb.TRACE[2024-06-15 16:31:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:40.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:40.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-15 16:31:40.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-15 16:31:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:40.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:40.711][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:40.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:40.720][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:40.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:40.726][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:40.730][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:40.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:40.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:40.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:40.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:40.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:40.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:40.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:40.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:40.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:40.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:40.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:40.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:40.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:40.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:40.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:40.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.851][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:40.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:40.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:40.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:40.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:40.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:40.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:40.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.889][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:40.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:40.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:40.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:40.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:40.994][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:40.996][private$selectFields]
biodb.TRACE[2024-06-15 16:31:40.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:40.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:41.001][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:41.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.010][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.019][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.025][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.027][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.032][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.034][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.037][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.039][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.041][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.055][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.062][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.067][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.069][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.075][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.081][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.083][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.089][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.103][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.105][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.106][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.126][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.141][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.143][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.149][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.151][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.157][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.159][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.171][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.173][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.200][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.202][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.215][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.223][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.242][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.250][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.256][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:41.258][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:41.260][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.268][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.274][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.276][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.278][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.282][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.284][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.286][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.290][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.292][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.294][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.300][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.302][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.308][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.316][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.318][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.331][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.333][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.336][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.338][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.343][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.345][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.352][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.357][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.366][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.369][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.374][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.375][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.378][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.379][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:41.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.682][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384817, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)-2-buten-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, ...].
biodb.DEBUG[2024-06-15 16:31:41.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:41.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:41.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:41.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:41.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:41.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:41.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:41.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:41.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:41.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:41.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:41.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:41.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:41.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:41.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:41.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:41.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:41.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.015][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:42.017][private$selectFields]
biodb.TRACE[2024-06-15 16:31:42.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:42.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:42.023][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:42.025][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.032][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.034][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.040][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.042][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.048][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.050][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.055][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.057][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.063][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.066][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.073][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.080][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.090][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.096][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.104][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.106][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.111][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.114][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.134][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.137][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.140][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.142][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.144][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.150][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.158][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.160][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.164][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.168][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.181][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.183][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.188][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.196][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.197][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.212][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.217][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.219][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.223][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.237][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.251][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.253][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.258][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.259][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.264][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:42.266][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:42.268][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.270][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.273][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.275][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.277][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.280][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.282][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.283][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.288][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.290][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.295][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.301][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.303][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.308][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.310][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.315][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.317][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.328][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.330][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.341][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.343][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.366][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.373][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.382][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.384][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.386][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.392][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.394][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.400][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:42.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.605][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.634][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-06-15 16:31:42.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:42.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:42.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:42.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:42.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:42.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:42.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:42.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:42.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:42.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:42.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.974][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:42.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.099][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:43.100][private$selectFields]
biodb.TRACE[2024-06-15 16:31:43.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:43.103][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:43.104][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:43.106][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.113][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.118][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.120][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.122][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.125][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.127][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.129][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.134][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.142][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.147][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.166][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.173][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.206][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.208][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.214][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.217][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.222][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.232][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.237][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.239][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.244][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.251][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.253][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.258][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.259][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.265][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.285][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.292][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.307][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.312][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.320][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.324][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.325][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.329][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:43.330][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:43.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.335][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.336][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.337][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.340][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.341][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.342][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.346][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.347][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.350][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.351][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.352][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.355][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.357][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.358][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.361][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.362][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.363][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.367][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.373][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.374][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.377][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.378][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.383][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.385][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.387][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.390][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.397][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.398][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.402][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.411][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.412][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.415][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.416][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.417][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.421][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:43.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:43.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:43.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:43.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:43.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:43.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:43.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-15 16:31:43.815][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:43.817][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:43.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:43.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:43.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:43.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:43.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:43.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:43.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:43.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:43.854][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:43.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-15 16:31:43.859][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:43.863][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-15 16:31:43.866][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:43.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:43.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:43.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:43.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:43.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:43.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:43.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:43.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.013][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.062][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.107][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:44.109][private$selectFields]
biodb.TRACE[2024-06-15 16:31:44.111][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:44.112][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:44.113][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:44.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.117][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.123][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.125][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.129][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.130][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.133][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.134][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.136][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.141][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.144][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.146][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.150][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.154][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.164][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.166][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.170][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.171][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.187][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.192][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.203][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.205][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.207][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.208][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.210][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.219][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.220][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.224][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.226][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.229][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.231][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.235][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.236][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.240][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.241][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.243][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.245][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.248][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.250][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.251][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.264][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.266][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.272][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.278][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.285][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.287][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.290][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.293][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.301][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.303][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.305][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.308][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.311][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:44.313][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:44.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.321][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.324][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.326][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.329][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.330][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.331][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.335][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.336][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.340][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.342][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.354][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.358][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.361][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.367][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.369][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.372][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.374][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.376][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.383][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.393][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.404][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.406][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.408][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.412][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.414][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.416][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.420][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.422][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.622][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.631][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.639][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385155, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-4-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-4-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:44.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:44.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:44.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:44.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:44.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:44.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:44.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:44.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:44.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.940][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:44.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:44.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:44.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.979][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:44.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:44.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:44.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.089][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:45.091][private$selectFields]
biodb.TRACE[2024-06-15 16:31:45.092][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:45.094][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:45.096][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:45.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.106][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.108][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.111][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.113][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.115][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.119][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.121][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.123][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.126][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.128][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.138][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.144][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.150][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.166][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.168][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.170][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.182][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.197][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.207][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.209][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.213][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.215][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.217][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.223][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.232][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.237][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.238][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.242][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.244][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.245][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.249][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.251][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.253][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.256][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.258][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.260][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.263][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.265][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.272][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.274][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.281][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.286][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.288][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.291][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.293][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.299][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.313][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.320][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.322][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.327][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.329][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.330][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.334][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.336][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:45.338][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:45.340][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.346][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.348][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.350][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.356][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.358][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.362][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.364][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.371][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.373][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.375][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.379][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.381][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.383][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.387][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.389][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.410][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.426][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.428][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.430][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.434][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.436][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.443][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.445][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.453][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.459][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.469][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.472][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.476][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.477][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.479][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.484][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:45.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:45.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:45.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:45.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385152, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-5-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-5-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:45.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:45.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:45.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:45.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:45.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:45.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:45.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:45.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:45.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:45.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:45.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:45.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:45.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:45.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:45.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:45.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:45.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:45.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:45.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:45.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:45.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.103][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:46.105][private$selectFields]
biodb.TRACE[2024-06-15 16:31:46.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:46.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:46.111][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:46.114][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.122][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.124][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.130][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.133][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.137][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.138][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.144][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.149][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.151][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.158][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.165][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.169][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.175][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.176][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.177][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.198][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.214][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.220][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.223][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.225][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.230][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.232][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.240][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.242][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.246][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.248][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.251][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.254][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.257][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.259][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.264][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.266][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.270][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.271][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.273][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.279][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.295][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.303][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.305][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.307][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.310][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.312][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.325][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.326][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.328][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.332][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.338][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.340][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.342][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.345][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.347][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.349][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.352][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.354][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:46.356][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:46.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.363][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.365][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.366][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.371][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.377][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.378][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.380][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.385][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.387][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.392][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.398][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.406][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.409][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.413][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.416][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.423][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.429][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.431][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.437][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.439][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.445][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.447][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.452][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.460][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.463][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.467][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.470][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.474][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.476][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:46.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:46.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:46.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:46.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:46.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:46.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:46.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:46.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:46.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385150, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-4-fluoro-3-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-4-fluoranyl-3-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:46.935][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:46.937][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:46.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:46.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:46.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:46.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:46.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:46.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:46.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:46.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:46.988][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:46.991][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-06-15 16:31:46.993][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:47.001][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-06-15 16:31:47.005][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:47.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:47.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:47.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:47.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:47.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:47.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:47.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.282][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.298][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:47.300][private$selectFields]
biodb.TRACE[2024-06-15 16:31:47.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:47.304][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:47.306][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:47.308][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.314][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.316][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.318][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.324][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.326][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.342][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.344][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.347][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.351][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.353][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.355][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.359][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.361][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.363][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.366][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.368][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.374][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.377][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.388][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.390][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.392][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.396][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.397][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.403][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.412][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.418][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.421][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.427][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.429][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.432][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.434][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.436][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.439][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.441][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.443][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.447][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.454][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.456][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.458][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.463][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.465][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.468][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.470][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.475][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.477][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.479][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.486][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.491][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.496][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.510][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.512][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.514][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.517][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.519][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.525][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.533][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.534][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.540][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.547][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.556][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.558][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.561][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.563][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.565][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:47.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.568][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.570][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:47.572][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:47.573][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.579][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.580][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.582][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.586][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.588][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.595][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.597][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.600][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.602][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.611][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.613][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.619][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.633][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.637][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.642][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.646][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.650][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.658][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.665][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.667][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:47.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.681][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.683][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:47.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.686][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.688][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.690][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:47.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.695][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:47.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:47.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:47.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:47.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:47.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:47.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:47.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:47.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:47.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.101][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384817, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)-2-buten-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, 2-methyl-4-(7H-purin-6-yl)but-2-en-1-ol, ...].
biodb.DEBUG[2024-06-15 16:31:48.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:48.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:48.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:48.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:48.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:48.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:48.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:48.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.393][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:48.395][private$selectFields]
biodb.TRACE[2024-06-15 16:31:48.397][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:48.399][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:48.400][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:48.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.410][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.412][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.414][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.417][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.419][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.421][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.425][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.427][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.429][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.433][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.437][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.441][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.443][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.449][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.451][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.459][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.465][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.471][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.473][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:48.475][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:48.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.479][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.486][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.500][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.509][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.511][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.516][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.517][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.521][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.523][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.524][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.528][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.529][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.535][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.536][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.538][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.543][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.545][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.548][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.550][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.552][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.555][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.557][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.559][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.564][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.566][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.569][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.576][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.578][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.583][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.590][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.592][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:48.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:48.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.597][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.616][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.621][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.625][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.639][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.641][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.643][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.646][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.648][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.650][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.653][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.655][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.657][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:48.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.660][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.662][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:48.664][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:48.666][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.673][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.675][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.678][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.680][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.682][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.687][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.693][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.694][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.696][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.700][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.701][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.707][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.708][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.710][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.714][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.715][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.721][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.729][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:48.731][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:48.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.736][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:48.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.741][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.743][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.745][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:48.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.748][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:48.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:48.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.755][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:48.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.765][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.767][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.773][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.780][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:48.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:48.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:48.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:48.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:48.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:48.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:48.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:48.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:48.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.980][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:48.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171380427, 2-(octanoyl(15N)amino)acetic acid, 2-(1-oxooctyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)acetic acid, 2-(octanoyl(15N)amino)(1,2-13C2)ethanoic acid, ...].
biodb.DEBUG[2024-06-15 16:31:49.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:49.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:49.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:49.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:49.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:49.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:49.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:49.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.287][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:49.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:49.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:49.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:49.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.336][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.469][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:49.471][private$selectFields]
biodb.TRACE[2024-06-15 16:31:49.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:49.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:49.476][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:49.478][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.484][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.486][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.488][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.491][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.493][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.495][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.499][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.501][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.507][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.515][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.517][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.519][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.523][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.525][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:49.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:49.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.530][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.532][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:49.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:49.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.538][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.540][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.542][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.548][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.550][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.562][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.566][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.570][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.572][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.578][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.585][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.587][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.589][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.593][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.595][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.597][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.601][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.603][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.605][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.609][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.611][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.617][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.619][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.621][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.624][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.626][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.629][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.632][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.634][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.636][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.640][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.642][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.644][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.648][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.650][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.652][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.656][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.658][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:49.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:49.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.664][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:49.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:49.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.672][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.674][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.676][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.679][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.681][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.684][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.687][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.689][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.692][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.695][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.699][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.703][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.705][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.711][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.723][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.729][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.735][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.736][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.739][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:49.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.744][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:49.746][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:49.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.750][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.754][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.755][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.758][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.759][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.760][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.764][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.766][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.772][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.774][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.778][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.780][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.786][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:49.788][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:49.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:49.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.797][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.798][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.799][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:49.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.803][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:49.804][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:49.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.807][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.808][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.812][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.813][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:49.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.819][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:49.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:49.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.831][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:49.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.839][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.841][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:49.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.847][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:49.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:49.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:49.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:49.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:49.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.255][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-15 16:31:50.258][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:50.260][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:50.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:50.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:50.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:50.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:50.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:50.285][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:50.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:50.298][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:50.304][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:50.306][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-06-15 16:31:50.309][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:50.313][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-06-15 16:31:50.317][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:50.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:50.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:50.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:50.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:50.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:50.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:50.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:50.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.456][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.639][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:50.641][private$selectFields]
biodb.TRACE[2024-06-15 16:31:50.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:50.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:50.647][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:50.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:50.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:50.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.655][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.657][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.659][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.663][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.665][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.667][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.671][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.673][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.676][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.680][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.682][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.688][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.690][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.692][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.696][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.698][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.704][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.712][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.714][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.716][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.722][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.728][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.736][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.738][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.740][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.744][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.746][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.748][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.752][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.760][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.762][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.764][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.768][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.770][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.772][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.776][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.778][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.780][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:50.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.796][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.800][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.802][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.804][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.808][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.810][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.812][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.816][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.818][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.824][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.826][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.848][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.858][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:50.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.872][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.877][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:50.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.882][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:50.884][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:50.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.888][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.890][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:50.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.898][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.900][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:50.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.904][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.906][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.908][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:50.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.914][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.916][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:50.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.922][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:50.924][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:50.926][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:50.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.934][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.936][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:50.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.941][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.943][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.949][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.951][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:50.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:50.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.964][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:50.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:50.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.977][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.979][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:50.981][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:50.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:50.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:50.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:50.994][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:50.996][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:50.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.004][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.011][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.017][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.032][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.034][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.042][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.047][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385155, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-4-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-4-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-4-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:51.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:51.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:51.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:51.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:51.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:51.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:51.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.706][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:51.708][private$selectFields]
biodb.TRACE[2024-06-15 16:31:51.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:51.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:51.713][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:51.715][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.720][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.722][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.729][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.731][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.734][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.736][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.738][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.742][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.743][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.745][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.753][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.756][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.758][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.765][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.767][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.770][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.777][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.779][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.781][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.785][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.786][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.788][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.792][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.794][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.814][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.816][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.822][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.826][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.829][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.831][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.837][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.839][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.841][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.844][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.846][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.848][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.852][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.853][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.855][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.859][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.861][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.863][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.868][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.870][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:51.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.876][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.878][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:51.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.881][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.885][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:51.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.893][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:51.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.897][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:51.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:51.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.905][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.906][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:51.909][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:51.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.912][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:51.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.922][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:51.924][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:51.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.930][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:51.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:51.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.945][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:51.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.951][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:51.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.960][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:51.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.968][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.970][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.976][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.978][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:51.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.984][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:51.986][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:51.987][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:51.989][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:51.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:51.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:51.995][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.997][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:51.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.003][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.010][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.012][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.018][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.020][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.025][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.027][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.035][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.042][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.056][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.058][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.063][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.078][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.084][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.088][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.096][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.109][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.277][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.324][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.340][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.515][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385152, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-3-fluoro-5-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-3-fluoro-5-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-3-fluoranyl-5-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:52.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:52.519][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:52.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:52.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:52.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:52.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:52.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.771][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:52.772][private$selectFields]
biodb.TRACE[2024-06-15 16:31:52.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:52.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:52.776][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:52.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.781][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.782][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.783][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.787][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.788][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.791][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.792][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.793][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.796][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.797][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.798][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.801][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.802][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.807][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.811][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.822][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.828][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.829][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.834][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.858][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.860][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.862][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.864][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.866][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.872][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.874][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:52.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:52.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:52.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.889][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:52.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.896][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:52.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.902][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.904][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:52.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:52.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.915][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.919][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:52.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.925][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:52.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:52.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:52.934][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.940][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:52.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.947][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:52.949][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:52.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.962][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:52.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.970][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:52.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:52.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.984][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.986][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:52.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:52.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:52.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.996][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:52.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.001][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:53.004][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:53.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.009][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:53.011][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:53.013][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.033][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.036][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.042][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.045][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.050][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.052][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.058][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.060][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.066][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.068][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.074][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.082][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.083][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.092][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.093][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.104][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.105][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.109][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.124][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.126][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.134][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.136][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.141][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:53.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171385150, N-[(1S)-2-amino-1-methyl-2-oxo-ethyl]-4-fluoro-3-hydroxy-benzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-amino-1-oxopropan-2-yl]-4-fluoro-3-hydroxybenzamide, N-[(2S)-1-azanyl-1-oxidanylidene-propan-2-yl]-4-fluoranyl-3-oxidanyl-benzamide, ...].
biodb.DEBUG[2024-06-15 16:31:53.505][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:53.507][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:31:53.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:31:53.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:53.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:53.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:53.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:53.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:53.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:53.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:53.624][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:53.642][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:53.645][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:53.649][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:53.652][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:53.656][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:53.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:53.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:53.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:53.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:53.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:53.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:53.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:53.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.887][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:53.889][private$selectFields]
biodb.TRACE[2024-06-15 16:31:53.891][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:53.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:53.894][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:53.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.901][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.902][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.904][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:53.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.907][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:53.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.913][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.914][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:53.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.918][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:53.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.922][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.924][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.925][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:53.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:53.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:53.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.933][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:53.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:53.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.937][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:53.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.943][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:53.945][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:53.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.950][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:53.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:53.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:53.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:53.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:53.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.976][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.978][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.980][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:53.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.987][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:53.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:53.993][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:53.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:53.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:53.998][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.000][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.001][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.007][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.009][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.014][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.016][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.023][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.028][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.030][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.035][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.037][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.042][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.054][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.056][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.058][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.061][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.063][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.077][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.091][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.093][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.097][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.098][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.100][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.106][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:54.107][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:54.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.111][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.114][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.116][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.118][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.121][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.123][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.125][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.132][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.137][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.139][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.144][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.146][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.151][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.167][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.172][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.174][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.179][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.186][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.192][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.220][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.221][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.223][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.225][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.226][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.230][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.396][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [130032437, 3,7-diethyl-2-methyl-benzofuran-4-ol, 3,7-diethyl-2-methyl-4-benzofuranol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, ...].
biodb.DEBUG[2024-06-15 16:31:54.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:54.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:54.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:54.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:54.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:54.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:54.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.709][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.810][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:54.812][private$selectFields]
biodb.TRACE[2024-06-15 16:31:54.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:54.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:54.815][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:54.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.820][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.822][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.823][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.827][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.828][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.830][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.837][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.838][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.842][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.843][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.845][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.850][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.855][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.860][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.861][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.863][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.865][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.866][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.868][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.870][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.871][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.877][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.880][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.887][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.888][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.893][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.896][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:54.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:54.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.910][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.912][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:54.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.918][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.920][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:54.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.926][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.928][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:54.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.933][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.935][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:54.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.940][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:54.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.948][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:54.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:54.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.954][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:54.955][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.959][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.960][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:54.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.964][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:54.965][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.969][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:54.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:54.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.979][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:54.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:54.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:54.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.988][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.992][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:54.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:54.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:54.998][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.000][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.005][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:55.006][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:55.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.013][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.014][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.018][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.019][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.023][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.028][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.029][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.034][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.041][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.049][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.057][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.060][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.080][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.095][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.097][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.102][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.110][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.335][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.453][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-15 16:31:55.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:55.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:55.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:55.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:55.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:55.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:55.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:55.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.615][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.658][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.756][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:55.757][private$selectFields]
biodb.TRACE[2024-06-15 16:31:55.759][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:55.761][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:55.763][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:55.765][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.773][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.775][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.779][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.781][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.783][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.788][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.791][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.794][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.796][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.798][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.802][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.810][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.818][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.825][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.833][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.835][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.837][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.842][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.847][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.851][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.854][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.858][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.861][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.870][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.872][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.877][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.878][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:55.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:55.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.889][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.891][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.893][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:55.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.896][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.909][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.912][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:55.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.918][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.920][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:55.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.925][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.927][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.930][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.931][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:55.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:55.944][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:55.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.949][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:55.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.954][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.956][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:55.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:55.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.963][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:55.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.968][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.970][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:55.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.977][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:55.979][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:55.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.991][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:55.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:55.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:55.998][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.000][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.005][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:56.007][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:56.009][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.017][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.022][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.024][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.029][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.031][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.034][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.041][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.042][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.046][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.048][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.053][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.060][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.061][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.063][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.072][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.073][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.077][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.078][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.086][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.088][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.091][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.093][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.096][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:56.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.385][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-06-15 16:31:56.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:56.456][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:56.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:56.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:56.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:56.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:56.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:56.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:56.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:56.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:56.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:56.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-15 16:31:56.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:56.507][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-15 16:31:56.511][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:56.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:56.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:56.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:56.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:56.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:56.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:56.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.667][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.674][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.773][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:56.775][private$selectFields]
biodb.TRACE[2024-06-15 16:31:56.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:56.779][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:56.781][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:56.783][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.785][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.789][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.791][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.793][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.798][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.800][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.802][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.806][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.808][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.811][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.817][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.819][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.823][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.825][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.832][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.834][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.836][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.840][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.849][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.858][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:56.862][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:56.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.866][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.868][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:56.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.874][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:56.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.885][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:56.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:56.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:56.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.902][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.904][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:56.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.909][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.911][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.913][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:56.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.917][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.919][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:56.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:56.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.928][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.939][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:56.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.945][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.948][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:56.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.952][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:56.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.963][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.965][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:56.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:56.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:56.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.980][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:56.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:56.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:56.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:56.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:56.998][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.001][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.007][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.024][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.042][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.053][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.059][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:57.061][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:57.063][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.074][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.080][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.091][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.098][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.106][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.122][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.128][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.131][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.147][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.158][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.161][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.167][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.185][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.190][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.202][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.206][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.208][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.210][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.216][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.348][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.579][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384639, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, ...].
biodb.DEBUG[2024-06-15 16:31:57.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:57.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:57.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:57.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:57.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:57.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:57.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:57.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.860][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:57.862][private$selectFields]
biodb.TRACE[2024-06-15 16:31:57.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:57.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:57.867][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:57.871][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.877][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.879][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.881][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:57.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.887][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:57.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.895][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.898][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:57.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.902][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.904][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.906][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:57.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.910][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:57.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.918][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.920][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:57.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:57.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.926][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:57.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:57.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:57.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.943][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.945][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:57.947][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:57.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:57.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.961][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:57.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.965][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:57.968][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:57.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.972][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:57.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.980][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.982][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:57.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.988][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.989][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:57.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:57.993][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:57.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:57.997][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:57.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.002][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.004][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.007][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.009][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.011][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.014][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.016][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.018][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.022][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.023][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.025][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.029][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.038][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.047][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.050][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.052][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.054][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.057][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.059][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:58.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:58.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.066][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.073][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.080][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.082][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.086][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.093][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.096][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.101][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.103][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.108][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:31:58.110][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:31:58.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.119][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.121][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.126][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.128][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.131][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.133][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.135][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.138][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.140][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.142][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.147][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.149][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.152][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.154][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.160][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.164][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.167][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.169][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.174][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.176][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.181][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.183][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.189][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.190][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.204][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.206][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.212][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.213][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.219][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:58.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-15 16:31:58.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:58.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:58.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:58.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:58.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:58.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:58.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:58.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:58.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.852][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:58.854][private$selectFields]
biodb.TRACE[2024-06-15 16:31:58.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:58.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:58.860][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:58.862][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.868][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.869][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.875][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.877][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.879][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.883][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.885][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.887][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:58.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.891][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.895][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:58.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.901][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.903][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:58.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.908][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:58.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:58.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:58.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:58.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:58.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.928][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.929][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:58.931][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:58.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.936][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.938][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:58.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.943][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:58.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.950][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:58.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:58.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:58.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.962][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.963][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:58.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.973][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.976][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.978][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:58.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.982][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.984][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:58.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:58.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.990][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.991][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:58.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:58.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:58.997][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:58.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.002][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.006][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.007][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.011][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.021][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.029][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.033][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:59.034][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:59.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.037][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.042][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.043][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.052][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.057][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.064][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.066][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.071][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.073][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.078][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:31:59.080][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:31:59.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.088][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.090][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.095][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.097][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.102][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.104][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.108][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.109][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.118][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.122][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.124][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.136][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.146][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.152][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.153][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.161][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.162][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.163][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.167][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.168][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.173][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:31:59.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-15 16:31:59.501][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:31:59.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:31:59.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:59.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:59.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:59.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:59.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:59.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:59.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:31:59.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:31:59.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:31:59.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-06-15 16:31:59.581][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:31:59.585][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-06-15 16:31:59.589][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:31:59.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:31:59.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:31:59.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:31:59.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:31:59.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:31:59.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:31:59.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:31:59.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.712][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.748][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:59.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:59.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:59.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:59.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:31:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:31:59.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.864][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:59.866][private$selectFields]
biodb.TRACE[2024-06-15 16:31:59.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:31:59.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:31:59.871][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:31:59.873][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:31:59.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:31:59.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.878][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.880][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.882][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:31:59.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.888][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.890][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:31:59.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.894][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.896][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.899][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:31:59.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.905][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.907][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:31:59.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.911][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.915][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:31:59.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.921][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:31:59.923][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:31:59.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:31:59.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:31:59.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.936][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.941][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:31:59.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.945][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.947][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:31:59.949][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:31:59.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.955][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:31:59.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.961][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:31:59.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.970][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.972][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:31:59.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:31:59.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.978][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:31:59.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.987][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.989][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.991][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:31:59.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:31:59.995][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:31:59.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:31:59.999][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.003][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.005][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.008][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.020][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.024][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.028][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.030][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.032][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.036][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.038][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.040][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.044][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.047][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.051][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.053][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.055][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.060][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.061][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.071][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.074][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.078][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.080][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.082][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.092][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.101][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.106][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.113][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.115][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.116][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.122][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.129][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.131][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.136][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:00.137][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:00.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.151][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.153][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.157][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.164][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.165][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.168][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.171][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.173][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.176][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.180][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.183][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.188][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.194][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.195][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.196][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.205][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.206][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.210][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.221][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.223][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.225][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.227][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.229][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.230][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.232][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.234][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:00.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.379][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.431][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.445][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [130032437, 3,7-diethyl-2-methyl-benzofuran-4-ol, 3,7-diethyl-2-methyl-4-benzofuranol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, 3,7-diethyl-2-methyl-1-benzofuran-4-ol, ...].
biodb.DEBUG[2024-06-15 16:32:00.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:00.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:00.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:00.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:00.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:00.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:00.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.755][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.841][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.857][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:00.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.872][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:00.873][private$selectFields]
biodb.TRACE[2024-06-15 16:32:00.875][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:32:00.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:32:00.878][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:00.880][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:00.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:00.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.889][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:00.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.896][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:00.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.899][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.901][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.903][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:00.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.908][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:00.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.914][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.915][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.917][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:00.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.921][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.922][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:00.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:00.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:00.931][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:00.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.935][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.939][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:00.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.944][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:00.946][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:00.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.950][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:00.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:00.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.966][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.968][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:00.970][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:00.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:00.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.981][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.983][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.985][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:00.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.991][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.993][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:00.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:00.996][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:00.998][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.000][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.004][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.006][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.012][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.019][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.021][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.023][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.030][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.034][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.036][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.039][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.041][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.043][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.044][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.055][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.058][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.060][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.061][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.063][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.066][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.068][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.074][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.079][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.086][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.088][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.092][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.094][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.097][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.099][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.101][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.103][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:01.104][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:01.106][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.111][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.117][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.121][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.124][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.125][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.127][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.129][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.131][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.132][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.134][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.139][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.141][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.145][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.157][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.159][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.162][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.164][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.172][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.178][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.180][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.195][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.197][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.200][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.201][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.203][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.205][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.207][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:01.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.410][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.418][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.531][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171378033, (2R)-2-(diaminoamino)-5-guanidino-pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-(diaminoamino)-5-(diaminomethylideneamino)pentanoic acid, (2R)-2-[bis(azanyl)amino]-5-[bis(azanyl)methylideneamino]pentanoic acid, ...].
biodb.DEBUG[2024-06-15 16:32:01.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:01.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:01.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:01.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:01.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:01.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:01.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.752][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.865][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:01.867][private$selectFields]
biodb.TRACE[2024-06-15 16:32:01.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:32:01.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:32:01.872][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:01.874][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:01.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:01.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.881][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.896][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:01.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.902][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.910][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.912][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.918][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.920][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:01.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.926][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.928][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:01.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.931][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.933][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:01.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:01.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.938][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.940][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:01.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:01.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.946][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:01.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.953][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.954][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:01.956][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:01.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.960][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.962][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:01.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.967][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.969][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.971][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:01.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.974][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.976][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:01.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:01.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.980][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:01.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.985][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.986][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:01.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:01.992][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:01.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.996][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:01.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.000][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.002][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.004][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.008][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.017][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.020][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.023][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.027][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.030][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.034][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.038][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.039][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.041][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.045][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.048][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.052][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.054][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.059][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.066][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.070][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.073][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.075][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.077][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.082][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.087][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.089][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.094][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.096][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.098][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.102][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.109][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.112][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.120][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.125][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.127][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.130][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.132][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:02.134][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:02.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.145][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.148][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.150][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.152][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.157][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.159][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.172][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.173][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.179][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.184][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.186][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.188][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.200][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.202][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.204][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.205][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.209][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.212][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.214][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.215][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.220][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.225][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.226][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.229][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.231][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.234][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.235][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.394][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.402][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.410][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.418][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171372625, tert-butyl 3-amino-2-fluoro-pyrrolidine-1-carboxylate, 3-amino-2-fluoro-1-pyrrolidinecarboxylic acid tert-butyl ester, tert-butyl 3-amino-2-fluoropyrrolidine-1-carboxylate, tert-butyl 3-azanyl-2-fluoranyl-pyrrolidine-1-carboxylate, ...].
biodb.DEBUG[2024-06-15 16:32:02.550][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:32:02.551][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-06-15 16:32:02.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:02.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:02.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:02.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:02.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:02.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:02.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:02.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-06-15 16:32:02.581][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-06-15 16:32:02.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-06-15 16:32:02.586][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:32:02.589][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-06-15 16:32:02.591][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-06-15 16:32:02.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:02.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:02.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:02.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:02.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:02.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:02.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:02.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.865][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:02.867][private$selectFields]
biodb.TRACE[2024-06-15 16:32:02.868][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:32:02.870][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:32:02.872][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:02.873][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:02.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.879][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.880][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.882][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:02.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.886][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.887][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:02.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.894][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.896][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:02.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.901][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.903][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:02.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.906][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.908][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.910][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:02.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.913][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:02.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:02.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.920][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.922][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:02.924][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:02.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.927][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:02.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.934][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.936][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:02.938][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.941][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.943][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:02.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.948][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:02.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.957][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:02.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:02.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.962][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:02.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.969][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.971][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.972][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:02.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.977][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.979][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:02.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.983][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:02.984][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.986][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:02.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:02.989][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.003][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.010][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.012][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.014][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.020][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.026][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.030][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.033][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.042][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.044][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.047][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.049][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.055][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.056][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.062][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.065][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.069][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.070][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.072][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.076][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.083][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.085][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.091][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.099][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.107][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.109][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.112][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.117][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.120][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.123][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.126][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.128][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.132][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.134][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:03.136][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:03.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.144][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.146][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.148][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.151][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.153][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.155][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.160][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.162][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.165][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.167][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.172][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.176][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.180][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.181][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.193][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.198][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.199][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.200][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.203][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.205][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.207][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.210][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.217][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.219][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.224][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.231][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.232][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.234][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.238][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.240][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.242][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.247][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:03.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.440][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.445][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171384639, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, 2,2-dinitroethoxymethylbenzene, ...].
biodb.DEBUG[2024-06-15 16:32:03.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:03.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:03.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:03.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:03.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:03.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:03.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.740][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.748][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.853][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.861][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.869][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:03.871][private$selectFields]
biodb.TRACE[2024-06-15 16:32:03.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:32:03.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:32:03.877][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:03.879][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:03.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:03.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.885][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.887][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.889][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:03.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.892][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.894][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.896][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:03.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.900][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.902][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.904][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:03.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.908][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:03.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.916][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.918][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.920][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:03.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.924][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.926][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:03.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:03.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.932][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.934][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:03.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:03.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.940][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:03.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.949][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:03.952][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:03.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.955][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.957][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:03.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.963][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:03.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.971][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:03.975][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:03.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.979][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:03.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.988][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.990][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:03.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:03.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:03.996][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:03.998][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.002][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.004][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.006][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.017][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.019][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.025][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.026][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.032][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.034][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.036][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.040][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.042][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.044][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.048][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.050][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.052][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.058][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.064][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.072][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.074][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.082][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:04.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:04.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.092][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.096][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.104][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.106][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.112][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.121][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.124][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.129][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.131][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.137][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.139][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.143][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.145][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:32:04.147][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:32:04.149][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.155][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.157][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.159][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.165][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.167][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.171][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.179][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.181][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.183][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.187][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.189][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.208][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.210][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.218][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.220][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.226][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.235][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.240][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.242][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.244][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.247][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.249][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.262][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.264][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.269][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.271][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.278][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.453][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.551][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374155, potassium;(2,4-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,4-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-15 16:32:04.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:04.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:04.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:04.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:04.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:04.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:04.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:04.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:04.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:04.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:04.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:04.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.826][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:04.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:04.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:04.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:04.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:04.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:04.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.938][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:04.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.954][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:04.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.970][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:04.972][private$selectFields]
biodb.TRACE[2024-06-15 16:32:04.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-06-15 16:32:04.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-06-15 16:32:04.978][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-06-15 16:32:04.980][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:04.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:04.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.986][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.988][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.990][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:04.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:04.994][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:04.995][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.997][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:04.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.001][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.003][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.005][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.009][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.010][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.012][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.016][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.018][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.020][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.024][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.026][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.031][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.039][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.048][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:05.050][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:05.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.055][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.057][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.060][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.065][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.066][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.070][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.075][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.076][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.078][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.080][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.081][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.083][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.085][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.086][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:05.088][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:05.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.090][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:05.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:05.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.095][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.096][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.098][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.100][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.101][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.103][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.105][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.106][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.108][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.110][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.111][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.113][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.115][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.117][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.118][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.120][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.127][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.129][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.135][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.137][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.138][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.142][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.144][ef$get] Asked field names are: logp.
biodb.TRACE[2024-06-15 16:32:05.146][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-06-15 16:32:05.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.149][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.151][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.153][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.156][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.158][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.163][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.165][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.167][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.170][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.177][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.179][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.181][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.185][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.186][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.188][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.193][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-06-15 16:32:05.195][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-06-15 16:32:05.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.199][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.201][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:32:05.203][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-06-15 16:32:05.205][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:05.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:05.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.211][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.215][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.219][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.222][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.224][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.228][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.230][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.232][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.236][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.241][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.249][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.252][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.254][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.261][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.268][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.270][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.276][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.280][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.284][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.292][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.294][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.296][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.300][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.310][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.312][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.315][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.317][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.320][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.323][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.326][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-06-15 16:32:05.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:05.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:05.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:05.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-06-15 16:32:05.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-06-15 16:32:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-06-15 16:32:05.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-15 16:32:05.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-15 16:32:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-15 16:32:05.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-15 16:32:05.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-15 16:32:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-15 16:32:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-15 16:32:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-06-15 16:32:05.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-15 16:32:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-15 16:32:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-15 16:32:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-06-15 16:32:05.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-06-15 16:32:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.655][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171374057, potassium;(2,3-dimethylphenyl)methyl-trifluoro-boranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-trifluoroboranuide, potassium;(2,3-dimethylphenyl)methyl-tris(fluoranyl)boranuide, ...].
biodb.DEBUG[2024-06-15 16:32:05.656][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-06-15 16:32:05.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-06-15 16:32:05.665][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:32:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:32:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:05.670][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-06-15 16:32:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-06-15 16:32:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:05.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:32:05.682][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-15 16:32:05.684][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-06-15 16:32:05.685][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-06-15 16:32:05.686][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-15 16:32:05.688][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:05.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:05.690][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:05.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:05.692][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-15 16:32:05.699][biodb::testContext]
biodb.INFO [2024-06-15 16:32:05.701][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:32:05.702][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-06-15 16:32:05.703][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-15 16:32:05.704][biodb::testContext]
biodb.INFO [2024-06-15 16:32:05.708][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:32:05.711][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-15 16:32:05.720][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:32:05.722][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-15 16:32:05.724][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.730][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-15 16:32:05.732][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.739][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-15 16:32:05.741][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.747][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-15 16:32:05.749][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-15 16:32:05.751][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-15 16:32:05.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.758][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-15 16:32:05.760][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-15 16:32:05.762][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.768][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-15 16:32:05.770][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-15 16:32:05.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.779][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-15 16:32:05.781][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-15 16:32:05.783][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-15 16:32:05.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.789][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-15 16:32:05.791][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.798][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-15 16:32:05.800][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-15 16:32:05.802][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-15 16:32:05.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.808][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:32:05.810][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-15 16:32:05.812][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-15 16:32:05.813][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-15 16:32:05.815][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-15 16:32:05.817][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-15 16:32:05.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.824][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-15 16:32:05.825][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-15 16:32:05.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.832][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-15 16:32:05.834][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-15 16:32:05.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.840][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-15 16:32:05.842][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-15 16:32:05.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.849][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-15 16:32:05.851][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-15 16:32:05.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.857][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-15 16:32:05.859][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-15 16:32:05.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.865][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-15 16:32:05.867][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-15 16:32:05.872][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-15 16:32:05.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.880][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-15 16:32:05.882][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-15 16:32:05.884][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-15 16:32:05.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:05.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:05.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:05.892][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-15 16:32:05.895][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.897][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-15 16:32:05.899][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.901][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:05.903][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.905][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.907][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.909][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.911][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:32:05.913][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:05.915][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.916][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-15 16:32:05.918][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:05.920][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:05.922][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.924][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:32:05.924][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:32:05.924][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:32:05.924][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:32:05.924][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:32:05.925][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:32:05.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:05.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:05.931][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:05.932][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:05.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:05.936][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.938][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:05.939][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:05.941][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:05.943][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.944][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:05.946][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-15 16:32:05.949][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.951][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:32:05.953][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.955][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:05.956][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.958][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.960][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.962][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.964][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:32:05.965][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:05.967][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.969][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-15 16:32:05.971][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:05.973][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:05.975][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:05.977][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:32:05.977][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:32:05.977][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:32:05.977][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-15 16:32:05.977][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-15 16:32:05.979][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:32:05.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:05.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:05.984][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:05.985][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:05.987][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:05.989][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:05.991][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:05.992][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:05.994][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:05.996][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:05.997][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.000][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-15 16:32:06.002][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.004][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-15 16:32:06.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.008][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.012][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.013][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.015][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.030][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-15 16:32:06.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.035][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.038][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-15 16:32:06.041][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.043][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.045][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.048][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.050][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:32:06.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.056][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.060][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.062][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.064][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.068][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.070][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.072][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.075][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-15 16:32:06.078][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.080][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-15 16:32:06.082][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.085][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.087][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.089][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.093][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.095][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-15 16:32:06.097][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.099][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.101][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-15 16:32:06.103][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.104][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.106][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.108][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.110][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-15 16:32:06.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.114][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.116][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.118][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.119][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.121][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.123][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.125][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.127][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.128][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.130][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.133][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:32:06.134][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.292][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-15 16:32:06.295][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-15 16:32:06.298][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-15 16:32:06.301][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-15 16:32:06.303][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-15 16:32:06.306][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-15 16:32:06.309][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-15 16:32:06.311][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-15 16:32:06.314][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-15 16:32:06.317][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-15 16:32:06.319][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-15 16:32:06.322][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-15 16:32:06.324][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-15 16:32:06.327][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-15 16:32:06.330][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:32:06.332][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:32:06.335][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-15 16:32:06.338][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-15 16:32:06.340][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-15 16:32:06.342][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-15 16:32:06.345][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-15 16:32:06.347][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-15 16:32:06.350][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-15 16:32:06.352][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-15 16:32:06.354][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-15 16:32:06.357][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-15 16:32:06.359][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-15 16:32:06.361][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-15 16:32:06.364][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-15 16:32:06.366][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-15 16:32:06.368][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-15 16:32:06.371][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-15 16:32:06.373][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-15 16:32:06.376][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-15 16:32:06.378][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-15 16:32:06.381][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-15 16:32:06.383][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-15 16:32:06.386][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-15 16:32:06.389][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-15 16:32:06.391][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-15 16:32:06.394][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-15 16:32:06.396][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-15 16:32:06.399][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-15 16:32:06.401][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-15 16:32:06.404][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-15 16:32:06.407][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:32:06.409][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-15 16:32:06.412][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-15 16:32:06.415][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-15 16:32:06.417][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-15 16:32:06.420][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-15 16:32:06.422][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-15 16:32:06.425][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-15 16:32:06.427][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-15 16:32:06.430][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-15 16:32:06.432][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-15 16:32:06.435][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-15 16:32:06.437][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-15 16:32:06.440][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-15 16:32:06.442][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-15 16:32:06.445][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-15 16:32:06.447][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-15 16:32:06.450][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-15 16:32:06.452][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-15 16:32:06.457][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-15 16:32:06.460][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-15 16:32:06.462][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-15 16:32:06.465][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-15 16:32:06.467][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-15 16:32:06.469][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-15 16:32:06.472][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-15 16:32:06.474][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-15 16:32:06.477][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-15 16:32:06.479][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-15 16:32:06.481][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-15 16:32:06.484][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-15 16:32:06.486][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-15 16:32:06.489][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-15 16:32:06.491][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-15 16:32:06.494][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-15 16:32:06.496][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-15 16:32:06.499][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-15 16:32:06.501][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-15 16:32:06.504][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-15 16:32:06.510][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-06-15 16:32:06.513][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-15 16:32:06.515][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.518][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-15 16:32:06.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:06.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:06.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:06.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:06.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:06.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-15 16:32:06.745][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-06-15 16:32:06.749][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-06-15 16:32:06.752][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.755][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-06-15 16:32:06.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.759][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.761][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.763][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.765][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.770][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-06-15 16:32:06.773][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.775][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.776][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-06-15 16:32:06.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.780][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-06-15 16:32:06.780][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-06-15 16:32:06.782][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.784][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.786][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:32:06.788][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.790][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.792][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.797][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.802][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-06-15 16:32:06.802][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-06-15 16:32:06.806][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.808][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.810][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.812][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.814][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-06-15 16:32:06.818][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.820][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-06-15 16:32:06.822][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.823][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.825][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.827][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.829][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.831][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.832][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:32:06.834][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.836][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.838][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-06-15 16:32:06.840][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-06-15 16:32:06.842][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-06-15 16:32:06.844][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.846][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:32:06.848][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-15 16:32:06.850][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.851][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.853][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.859][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.861][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:32:06.861][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:32:06.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.866][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.867][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.870][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-06-15 16:32:06.873][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.875][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-06-15 16:32:06.877][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.879][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.881][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.882][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.884][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.886][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.889][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:32:06.891][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.892][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.894][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-06-15 16:32:06.896][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-06-15 16:32:06.902][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.904][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-15 16:32:06.904][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-15 16:32:06.904][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-15 16:32:06.907][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:32:06.909][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.910][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.912][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.922][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.924][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:32:06.924][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:32:06.924][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:32:06.927][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.929][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.931][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.933][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:32:06.936][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:32:06.940][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.942][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-06-15 16:32:06.944][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.946][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-15 16:32:06.948][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.950][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.952][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.953][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.955][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-15 16:32:06.957][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-15 16:32:06.959][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.961][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-06-15 16:32:06.963][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-15 16:32:06.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-06-15 16:32:06.964][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-06-15 16:32:06.966][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-15 16:32:06.969][self$setPropertyValue]
biodb.DEBUG[2024-06-15 16:32:06.971][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-06-15 16:32:06.973][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.977][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-15 16:32:06.980][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-15 16:32:06.981][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-15 16:32:06.984][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-15 16:32:06.986][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-06-15 16:32:06.986][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-06-15 16:32:06.986][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-06-15 16:32:06.988][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-15 16:32:06.990][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-15 16:32:06.992][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-15 16:32:06.994][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:32:06.997][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-06-15 16:32:07.000][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-15 16:32:07.003][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-15 16:32:07.006][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-06-15 16:32:07.009][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-15 16:32:07.012][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-06-15 16:32:07.021][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:32:07.024][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-06-15 16:32:07.027][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-06-15 16:32:07.030][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-15 16:32:07.033][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:32:07.035][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:32:07.039][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-06-15 16:32:07.041][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:32:07.043][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-06-15 16:32:07.046][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-06-15 16:32:07.056][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-06-15 16:32:07.067][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.070][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-15 16:32:07.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:07.074][biodb::testThat]
biodb.TRACE[2024-06-15 16:32:07.098][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-06-15 16:32:07.101][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:32:07.107][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-15 16:32:07.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:07.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:07.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:07.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:07.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:07.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:07.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:07.134][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.141][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.158][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:32:07.250][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-06-15 16:32:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:07.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:07.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.289][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:07.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:07.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:07.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:07.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:07.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.516][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.522][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.575][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.605][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.618][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.622][ef$get] fields variable is a list.
biodb.INFO [2024-06-15 16:32:07.641][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.643][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-15 16:32:07.645][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:07.647][biodb::testThat]
biodb.DEBUG[2024-06-15 16:32:07.651][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-06-15 16:32:07.654][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-06-15 16:32:07.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-06-15 16:32:07.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-15 16:32:07.688][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-06-15 16:32:07.690][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-06-15 16:32:07.694][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-06-15 16:32:07.697][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-06-15 16:32:07.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-15 16:32:07.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:07.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:07.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:07.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:07.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:07.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-15 16:32:07.725][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.732][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.749][ef$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-15 16:32:07.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-06-15 16:32:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-15 16:32:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-15 16:32:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-15 16:32:07.839][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-06-15 16:32:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-15 16:32:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-15 16:32:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:32:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-15 16:32:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:32:07.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-15 16:32:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:32:07.882][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.884][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-15 16:32:07.886][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:07.888][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.902][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.904][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-15 16:32:07.906][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:07.907][biodb::testThat]
biodb.WARN [2024-06-15 16:32:07.913][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-06-15 16:32:07.920][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-06-15 16:32:07.940][biodb::testThat]
biodb.INFO [2024-06-15 16:32:07.942][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-15 16:32:07.945][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:07.947][biodb::testThat]
biodb.TRACE[2024-06-15 16:32:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.987][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:07.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:07.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:07.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:07.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.003][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:08.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.025][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:08.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.043][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-06-15 16:32:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-06-15 16:32:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-06-15 16:32:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-15 16:32:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:08.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-15 16:32:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-15 16:32:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-15 16:32:08.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-15 16:32:08.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-15 16:32:08.107][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.109][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-15 16:32:08.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:08.127][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.146][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.149][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-15 16:32:08.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:08.154][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.172][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.174][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-15 16:32:08.176][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:08.178][biodb::testThat]
biodb.DEBUG[2024-06-15 16:32:08.185][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-06-15 16:32:08.280][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-06-15 16:32:08.409][biodb::testThat]
biodb.INFO [2024-06-15 16:32:08.412][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-15 16:32:08.414][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-15 16:32:08.416][biodb::testThat]
biodb.DEBUG[2024-06-15 16:32:08.520][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-06-15 16:32:08.638][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-15 16:32:08.641][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-06-15 16:32:08.643][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-06-15 16:32:08.644][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-15 16:32:08.645][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-15 16:32:08.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-15 16:32:08.648][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-15 16:32:08.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-15 16:32:08.650][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-15 16:32:08.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 963 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_200_gene.R:37:1'): Entry fields have a correct value ──────
Error in `file(file, ifelse(append, "a", "w"))`: cannot open the connection
Backtrace:
     ▆
  1. ├─base::do.call(fct, params)
  2. └─biodb (local) `<fn>`(conn = `<NcbGnCnn>`, opt = `<named list>`)
  3.   └─opt$refEntries$saveEntriesAsJson(id, list(e))
  4.     └─private$bdb$saveEntriesAsJson(entries, json.files)
  5.       └─entries[[i]]$getFieldsAsJson(compute = compute)
  6.         └─self$computeFields()
  7.           └─private$computeField(f)
  8.             └─self$getBiodb()$getFactory()$getEntry(db, id = db.id)
  9.               └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
 10.                 └─conn$getEntryContent(ids)
 11.                   └─cch$saveContentToFile(...)
 12.                     └─private$doSaveContentToFile(...)
 13.                       └─biodb:::saveContentsToFiles(file.paths, content)
 14.                         └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
 15.                           └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
 16.                             └─base::cat(cnt, file = f)
 17.                               └─base::file(file, ifelse(append, "a", "w"))

[ FAIL 1 | WARN 2 | SKIP 0 | PASS 963 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.0 RC (2024-04-16 r86468 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.9.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'longtests/testthat.R' failed.
Last 13 lines of output:
    7.           └─private$computeField(f)
    8.             └─self$getBiodb()$getFactory()$getEntry(db, id = db.id)
    9.               └─private$loadEntries(conn$getId(), missing.ids, drop = FALSE)
   10.                 └─conn$getEntryContent(ids)
   11.                   └─cch$saveContentToFile(...)
   12.                     └─private$doSaveContentToFile(...)
   13.                       └─biodb:::saveContentsToFiles(file.paths, content)
   14.                         └─base::mapply(function(cnt, f) cat(cnt, file = f), contents, files)
   15.                           └─biodb (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
   16.                             └─base::cat(cnt, file = f)
   17.                               └─base::file(file, ifelse(append, "a", "w"))
  
  [ FAIL 1 | WARN 2 | SKIP 0 | PASS 963 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)