Back to Long Tests report for BioC 3.20

This page was generated on 2024-08-13 22:28 -0400 (Tue, 13 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.9.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-08-10 09:55 -0400 (Sat, 10 Aug 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 347e93f
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
StartedAt: 2024-08-10 16:01:58 -0400 (Sat, 10 Aug 2024)
EndedAt: 2024-08-10 16:03:43 -0400 (Sat, 10 Aug 2024)
EllapsedTime: 105.9 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-08-10 16:02:36.246][biodb::testContext]
biodb.INFO [2024-08-10 16:02:36.249][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:02:36.249][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-08-10 16:02:36.250][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:02:36.251][biodb::testContext]
biodb.INFO [2024-08-10 16:02:36.256][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:02:36.257][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:02:36.262][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:36.263][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:02:36.264][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.266][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:02:36.279][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.281][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:02:36.282][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.285][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:02:36.285][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:02:36.286][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:02:36.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.289][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:02:36.289][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:02:36.290][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.293][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:02:36.293][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:02:36.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.296][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:02:36.297][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:02:36.297][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:02:36.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.300][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:02:36.301][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.303][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:02:36.304][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:02:36.305][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:02:36.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.307][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:02:36.308][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:02:36.309][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:02:36.309][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:02:36.310][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:02:36.311][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:02:36.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.313][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:02:36.314][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:02:36.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.317][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:02:36.317][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:02:36.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.320][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:02:36.321][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:02:36.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.323][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:02:36.324][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:02:36.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.326][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:02:36.327][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:02:36.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.330][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:02:36.330][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:02:36.346][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:02:36.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.349][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:02:36.349][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:02:36.350][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:02:36.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.355][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:02:36.384][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.394][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:02:36.395][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.396][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.397][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.398][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.399][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.400][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:02:36.400][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.401][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.402][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:02:36.402][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.403][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.404][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:02:36.405][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:36.406][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.407][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.407][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.408][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.409][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.410][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.411][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.412][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.412][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.413][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.414][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:02:36.415][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.416][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:02:36.416][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.417][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.418][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.419][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.419][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.420][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.421][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:02:36.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.422][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.423][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:02:36.424][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.424][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.425][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:02:36.426][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:36.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.428][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.429][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.430][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.430][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.431][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.432][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.432][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.433][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.434][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.435][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:02:36.436][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.437][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:02:36.437][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.438][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.439][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.439][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.440][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.441][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.442][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:02:36.442][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.443][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.444][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:02:36.444][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.445][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.446][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.447][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.447][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:36.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.449][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.450][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.451][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.452][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.453][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.454][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.455][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.456][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:02:36.457][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.458][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:02:36.458][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.459][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.460][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.460][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.461][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.462][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.462][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:02:36.463][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.464][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.465][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:02:36.465][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.466][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.467][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.468][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.468][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:36.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.470][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.472][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.473][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.474][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.474][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.475][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.476][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.478][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:36.479][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.537][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:02:36.540][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:02:36.541][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:02:36.542][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:02:36.543][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:02:36.544][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:02:36.545][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:02:36.546][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:02:36.547][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:02:36.548][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:02:36.549][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:02:36.550][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:02:36.551][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:02:36.552][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:02:36.553][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:02:36.554][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:02:36.555][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:02:36.556][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:02:36.557][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:02:36.558][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:02:36.559][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:02:36.560][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:02:36.561][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:02:36.562][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:02:36.563][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:02:36.564][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:02:36.565][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:02:36.566][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:02:36.567][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:02:36.568][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:02:36.569][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:02:36.570][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:02:36.571][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:02:36.572][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:02:36.573][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:02:36.574][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:02:36.575][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:02:36.576][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:02:36.577][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:02:36.578][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:02:36.579][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:02:36.580][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:02:36.581][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:02:36.582][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:02:36.583][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:02:36.584][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:02:36.585][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:02:36.586][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:02:36.587][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:02:36.588][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:02:36.589][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:02:36.591][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:02:36.592][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:02:36.593][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:02:36.594][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:02:36.595][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:02:36.595][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:02:36.596][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:02:36.598][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:02:36.599][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:02:36.600][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:02:36.601][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:02:36.602][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:02:36.603][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:02:36.603][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:02:36.604][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:02:36.605][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:02:36.606][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:02:36.607][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:02:36.608][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:02:36.609][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:02:36.611][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:02:36.612][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:02:36.612][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:02:36.613][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:02:36.614][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:02:36.615][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:02:36.616][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:02:36.617][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:02:36.618][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:02:36.619][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:02:36.620][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:02:36.621][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:02:36.625][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:02:36.626][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:02:36.629][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:36.630][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.631][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:36.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:36.715][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-08-10 16:02:36.722][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:36.724][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.724][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-08-10 16:02:36.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.726][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.726][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.727][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.728][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.729][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.729][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-08-10 16:02:36.730][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.731][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.732][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-08-10 16:02:36.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.733][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-08-10 16:02:36.733][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-08-10 16:02:36.734][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.735][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.735][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:02:36.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.737][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.738][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.739][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.739][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.740][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:36.740][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-08-10 16:02:36.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.741][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.742][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.743][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.744][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:02:36.745][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.746][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-08-10 16:02:36.746][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.747][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.748][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.748][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.749][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.750][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.751][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:36.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.753][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-08-10 16:02:36.753][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-08-10 16:02:36.754][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-08-10 16:02:36.755][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.756][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:36.756][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:02:36.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.758][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.759][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.760][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.761][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:36.761][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:36.762][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.763][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.763][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.764][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.765][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:02:36.766][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.788][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-08-10 16:02:36.789][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.789][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.790][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.791][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.791][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.792][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.793][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:36.794][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.794][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.795][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.796][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:36.797][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.798][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:36.798][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:36.798][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:36.799][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:02:36.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.800][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.801][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.802][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.803][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.803][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:36.803][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:36.803][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:02:36.804][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.805][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.805][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.806][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:02:36.807][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:02:36.808][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.809][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-08-10 16:02:36.810][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.811][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:36.811][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.812][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.813][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.814][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:36.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:36.815][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.816][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-08-10 16:02:36.817][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:36.818][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-08-10 16:02:36.818][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:02:36.818][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:36.819][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:36.820][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:02:36.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.822][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:36.823][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:36.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:36.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:36.825][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:36.825][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:36.825][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:02:36.825][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:36.826][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:36.827][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:36.827][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:02:36.832][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-08-10 16:02:36.833][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:02:36.834][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:02:36.835][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-08-10 16:02:36.836][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:02:36.837][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-08-10 16:02:36.854][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:36.855][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-08-10 16:02:36.857][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:36.860][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-08-10 16:02:36.863][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:36.864][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:36.865][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-08-10 16:02:36.866][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:36.867][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:36.867][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-08-10 16:02:36.875][biodb::testThat]
biodb.INFO [2024-08-10 16:02:36.876][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:02:36.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:36.877][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:36.880][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-08-10 16:02:36.881][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:36.884][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:36.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:36.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:36.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:36.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:36.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:36.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:36.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:36.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.929][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:36.938][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:36.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:36.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.020][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-08-10 16:02:37.022][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.025][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.057][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.134][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.159][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.160][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.162][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.171][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.172][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.177][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.192][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-08-10 16:02:37.216][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:37.217][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:37.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.224][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:37.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.250][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.251][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.290][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-08-10 16:02:37.305][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.320][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.390][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.405][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.411][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.411][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.413][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.423][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.423][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.429][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.431][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:37.438][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.438][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:02:37.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.440][biodb::testThat]
biodb.DEBUG[2024-08-10 16:02:37.441][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-08-10 16:02:37.447][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:02:37.450][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-08-10 16:02:37.451][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-08-10 16:02:37.454][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-08-10 16:02:37.455][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:37.456][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:02:37.456][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:37.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.483][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.484][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:37.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:37.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:37.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:37.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:37.521][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:37.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:37.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.534][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.534][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.537][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:37.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:37.579][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-08-10 16:02:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:37.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:37.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:37.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:37.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:37.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:37.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:37.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:37.613][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.613][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:02:37.614][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.615][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.619][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.620][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:02:37.621][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.621][biodb::testThat]
biodb.WARN [2024-08-10 16:02:37.635][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-08-10 16:02:37.649][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-08-10 16:02:37.656][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.657][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:02:37.658][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.659][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:37.676][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.679][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.682][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.713][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:37.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:37.726][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.726][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:02:37.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.728][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.735][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.736][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:02:37.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.737][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.743][biodb::testThat]
biodb.INFO [2024-08-10 16:02:37.744][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:02:37.745][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:37.745][biodb::testThat]
biodb.DEBUG[2024-08-10 16:02:37.748][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-08-10 16:02:39.017][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-08-10 16:02:40.228][biodb::testThat]
biodb.INFO [2024-08-10 16:02:40.229][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:02:40.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:40.230][biodb::testThat]
biodb.INFO [2024-08-10 16:02:40.235][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:02:40.236][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-08-10 16:02:40.237][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-08-10 16:02:40.237][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:02:40.238][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.239][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.240][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-08-10 16:02:40.248][biodb::testContext]
biodb.INFO [2024-08-10 16:02:40.249][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:02:40.250][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-08-10 16:02:40.250][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:02:40.251][biodb::testContext]
biodb.INFO [2024-08-10 16:02:40.253][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:02:40.254][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:02:40.257][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:40.258][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:02:40.258][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.261][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:02:40.273][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.276][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:02:40.277][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.279][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:02:40.280][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:02:40.281][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:02:40.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.289][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:02:40.290][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:02:40.291][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.293][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:02:40.294][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:02:40.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.296][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:02:40.297][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:02:40.298][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:02:40.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.300][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:02:40.301][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.304][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:02:40.304][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:02:40.305][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:02:40.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.307][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:02:40.308][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:02:40.309][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:02:40.310][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:02:40.310][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:02:40.311][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:02:40.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.314][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:02:40.314][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:02:40.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.317][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:02:40.318][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:02:40.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.320][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:02:40.321][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:02:40.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.323][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:02:40.324][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:02:40.325][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.327][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:02:40.328][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:02:40.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.330][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:02:40.331][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:02:40.346][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:02:40.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.349][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:02:40.350][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:02:40.350][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:02:40.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.353][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:02:40.355][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.355][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:02:40.356][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.360][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.360][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:02:40.361][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.362][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.362][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:02:40.363][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.364][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:02:40.365][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:02:40.366][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:40.367][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.367][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.368][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.369][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.369][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.370][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.371][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.371][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.372][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.373][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.373][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.374][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:02:40.375][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.376][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:02:40.377][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.378][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.379][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.379][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.384][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.384][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.385][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:02:40.386][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.386][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.387][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:02:40.388][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.388][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.389][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.390][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:40.390][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:40.390][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:40.390][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:02:40.390][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:02:40.391][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:40.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.395][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.395][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.396][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.397][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.397][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.398][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.399][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:02:40.400][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.401][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:02:40.401][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.402][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.403][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.403][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.404][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.405][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.406][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:02:40.406][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.407][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.408][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:02:40.409][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.409][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.410][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.411][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.411][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:40.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.413][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.413][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.414][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.415][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.416][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.417][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.417][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.418][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.419][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.420][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:02:40.421][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.422][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:02:40.422][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.423][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.424][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.424][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.425][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.426][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.427][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:02:40.427][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.428][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.429][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:02:40.430][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.430][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.431][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.432][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.432][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:02:40.433][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.434][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.434][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.436][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.437][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.438][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.438][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.439][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.440][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.441][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:40.441][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.501][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:02:40.502][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:02:40.503][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:02:40.504][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:02:40.505][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:02:40.506][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:02:40.507][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:02:40.508][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:02:40.509][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:02:40.510][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:02:40.511][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:02:40.512][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:02:40.513][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:02:40.514][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:02:40.515][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:02:40.516][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:02:40.517][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:02:40.518][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:02:40.519][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:02:40.520][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:02:40.521][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:02:40.522][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:02:40.523][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:02:40.524][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:02:40.525][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:02:40.526][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:02:40.527][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:02:40.528][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:02:40.529][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:02:40.530][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:02:40.531][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:02:40.532][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:02:40.533][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:02:40.534][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:02:40.535][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:02:40.536][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:02:40.537][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:02:40.538][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:02:40.539][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:02:40.540][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:02:40.545][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:02:40.546][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:02:40.547][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:02:40.548][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:02:40.549][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:02:40.550][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:02:40.551][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:02:40.552][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:02:40.553][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:02:40.554][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:02:40.555][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:02:40.556][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:02:40.557][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:02:40.557][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:02:40.558][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:02:40.559][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:02:40.560][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:02:40.561][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:02:40.562][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:02:40.563][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:02:40.564][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:02:40.565][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:02:40.566][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:02:40.567][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:02:40.568][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:02:40.569][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:02:40.570][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:02:40.571][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:02:40.572][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:02:40.573][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:02:40.574][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:02:40.575][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:02:40.576][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:02:40.577][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:02:40.578][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:02:40.579][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:02:40.580][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:02:40.581][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:02:40.582][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:02:40.583][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:02:40.584][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:02:40.585][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:02:40.586][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:02:40.587][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:02:40.588][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:02:40.589][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:02:40.590][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.591][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:02:40.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:40.674][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-08-10 16:02:40.675][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:40.677][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.678][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-08-10 16:02:40.679][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.679][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.680][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.681][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.681][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.682][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.683][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-08-10 16:02:40.684][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.684][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.685][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-08-10 16:02:40.686][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.686][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-08-10 16:02:40.686][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-08-10 16:02:40.687][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.688][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.689][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:02:40.689][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.690][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.691][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.693][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.693][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:40.693][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-08-10 16:02:40.694][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.695][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.695][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.696][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.697][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:02:40.698][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.699][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-08-10 16:02:40.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.700][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.701][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.702][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.706][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.707][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.708][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:40.708][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.709][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.710][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-08-10 16:02:40.711][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-08-10 16:02:40.712][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.713][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:40.713][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:02:40.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.717][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.718][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:40.718][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:40.719][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.719][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.720][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.721][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.721][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:02:40.723][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.723][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-08-10 16:02:40.724][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.725][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.725][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.726][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.727][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.728][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.728][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:40.729][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.730][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.731][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-08-10 16:02:40.731][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.732][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:02:40.733][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.734][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:02:40.734][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:02:40.734][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:02:40.734][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:02:40.735][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.736][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.737][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.738][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.739][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.739][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:40.739][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:40.739][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:02:40.740][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.741][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.742][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.742][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:02:40.743][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:02:40.745][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.745][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-08-10 16:02:40.746][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.747][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:02:40.748][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.748][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.749][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.750][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.751][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:02:40.751][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:02:40.752][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.753][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-08-10 16:02:40.754][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:02:40.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-08-10 16:02:40.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:02:40.755][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:02:40.756][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:02:40.757][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:02:40.758][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.759][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:02:40.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:02:40.760][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:02:40.761][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:02:40.762][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:02:40.762][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:02:40.762][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:02:40.762][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:02:40.763][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:02:40.764][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:02:40.764][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:02:40.769][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-08-10 16:02:40.770][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:02:40.771][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:02:40.772][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-08-10 16:02:40.773][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:02:40.774][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-08-10 16:02:40.780][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:02:40.781][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-08-10 16:02:40.782][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:02:40.783][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-08-10 16:02:40.788][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:40.789][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:40.790][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-08-10 16:02:40.791][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:40.791][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:40.836][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-08-10 16:02:40.840][biodb::testThat]
biodb.INFO [2024-08-10 16:02:40.841][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:02:40.841][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:40.842][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:40.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-08-10 16:02:40.847][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:40.850][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:40.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:40.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:40.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:40.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:40.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:40.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:40.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:40.868][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.888][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:40.889][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:40.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.892][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:40.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.894][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:40.895][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:40.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.901][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:40.902][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:40.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.907][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:40.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.909][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:40.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.914][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:40.914][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:40.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:40.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:40.959][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-08-10 16:02:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:40.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:40.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:40.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:40.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:40.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:40.975][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:40.997][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:40.998][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-08-10 16:02:40.999][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:02:41.011][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-08-10 16:02:41.012][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.017][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-08-10 16:02:41.026][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.027][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.028][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-08-10 16:02:41.028][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.029][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-08-10 16:02:41.030][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.031][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-08-10 16:02:41.041][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-08-10 16:02:41.042][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-08-10 16:02:41.043][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:41.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-08-10 16:02:41.046][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:41.048][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-08-10 16:02:41.049][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:41.050][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:41.051][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:41.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:41.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.075][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:41.076][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.115][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-08-10 16:02:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.119][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:41.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.128][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.131][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.228][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.249][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:41.250][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.270][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:41.271][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:41.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.293][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.296][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.296][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.317][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.318][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.339][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.340][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.352][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:41.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.365][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:41.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.380][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.386][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:41.387][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.389][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.398][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.399][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.404][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.405][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.410][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.411][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.416][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.417][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.422][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.423][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.428][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:41.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.434][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.435][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.441][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.441][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.453][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-08-10 16:02:41.454][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:41.455][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:41.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:41.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.473][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.475][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.479][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.480][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.486][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:41.487][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.492][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:41.493][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:41.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.499][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:41.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.505][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.506][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:41.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.553][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-08-10 16:02:41.562][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.565][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:41.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:41.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:41.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:41.577][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:41.578][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-08-10 16:02:41.616][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:41.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-08-10 16:02:41.629][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:41.630][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:41.631][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:41.632][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:41.632][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:41.633][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:41.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:41.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:41.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:41.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:41.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:41.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:41.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:41.646][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-08-10 16:02:41.661][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:41.662][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:41.662][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-08-10 16:02:43.043][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-08-10 16:02:44.437][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:44.438][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-08-10 16:02:44.456][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-08-10 16:02:44.458][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-08-10 16:02:44.460][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:44.461][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:44.462][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:44.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.484][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:44.485][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.487][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:44.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.521][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-08-10 16:02:44.534][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.540][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:44.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:44.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.546][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.549][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:44.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:44.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:44.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.631][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.634][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.637][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:44.638][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.650][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:44.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.656][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.659][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:44.659][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:44.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.674][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.685][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.685][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.707][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.708][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.720][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.727][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.730][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.731][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.733][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.753][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:44.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:44.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.773][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.779][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:44.780][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.782][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.792][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.792][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.798][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.799][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.811][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.811][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.817][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.818][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.823][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:44.824][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.829][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.830][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.835][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.836][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.851][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-08-10 16:02:44.852][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:44.853][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:44.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.877][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.878][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.884][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.884][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.890][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:44.891][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.894][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:44.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.897][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:44.898][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.899][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:44.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:44.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.904][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:44.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.911][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.912][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:44.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.958][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-08-10 16:02:44.960][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:44.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:44.974][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:44.975][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-08-10 16:02:44.975][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:44.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-08-10 16:02:44.977][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:44.979][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-08-10 16:02:44.979][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:44.980][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:44.981][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:44.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:44.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:44.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:44.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:44.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:44.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:44.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:44.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.001][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:45.002][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.004][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:45.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.041][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-08-10 16:02:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:45.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:45.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.137][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.140][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.145][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:45.146][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:45.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.160][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.170][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:45.171][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:45.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.188][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.191][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.192][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.213][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.213][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.225][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.228][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.234][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.234][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.250][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:45.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:45.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.259][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:45.259][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.270][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:45.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.276][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.279][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:45.280][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.282][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:45.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.291][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.292][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.297][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.298][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.303][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.309][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.310][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.319][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.320][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.325][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:45.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.327][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.331][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.332][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.337][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.338][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.346][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-08-10 16:02:45.347][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:45.348][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:45.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:45.369][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.370][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.376][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.377][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:45.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.383][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:45.384][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.385][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.390][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:45.391][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.393][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:45.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:45.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.396][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:45.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:45.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:45.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.403][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.404][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.412][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:45.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:45.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:45.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.450][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-08-10 16:02:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:45.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:45.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:45.468][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:45.469][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-08-10 16:02:45.469][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:45.471][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-08-10 16:02:45.472][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:45.473][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:45.473][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:45.474][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:45.475][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:45.476][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:45.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:45.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:45.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:45.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:45.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:45.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:45.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:45.513][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-08-10 16:02:45.524][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:45.525][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:45.536][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-08-10 16:02:46.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-08-10 16:02:48.317][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:48.321][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-08-10 16:02:48.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-08-10 16:02:48.326][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-08-10 16:02:48.328][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:48.328][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:48.329][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:48.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.352][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:48.353][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.387][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-08-10 16:02:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.391][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:48.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:48.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:48.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:48.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.626][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:48.627][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.629][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:48.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.646][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:48.647][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.663][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.666][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.667][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.669][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.669][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.687][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.688][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.703][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.709][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.710][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:48.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:48.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.733][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:48.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.736][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.749][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.756][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:48.756][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.769][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.770][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.775][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.776][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.782][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.788][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.789][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.794][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.795][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.801][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:48.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.803][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.807][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.808][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.814][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.815][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.829][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-08-10 16:02:48.830][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:48.831][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:48.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:48.865][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.868][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.873][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.874][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:48.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:48.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.881][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:48.882][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:48.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.889][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:48.890][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.892][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.894][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:48.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.897][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:48.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:48.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.905][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.906][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.913][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:48.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.960][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-08-10 16:02:48.961][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.964][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:48.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:48.975][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:48.976][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-08-10 16:02:48.977][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:48.978][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-08-10 16:02:48.979][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:48.980][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:48.981][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:48.981][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:48.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:48.983][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:48.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:48.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:48.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:48.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:48.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:48.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:48.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:48.994][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-08-10 16:02:48.996][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:48.996][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:48.997][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-08-10 16:02:50.161][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-08-10 16:02:51.334][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:51.336][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-08-10 16:02:51.339][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-08-10 16:02:51.341][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-08-10 16:02:51.342][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:51.343][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:51.344][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:51.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.371][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:51.372][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.408][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-08-10 16:02:51.408][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.414][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:51.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:51.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.496][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.499][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.501][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.504][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:51.505][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:51.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.519][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.522][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.525][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:51.526][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.528][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.537][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.545][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.546][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.548][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.576][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.576][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.597][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.598][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.600][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.609][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:51.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.618][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:51.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.621][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:51.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.639][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:51.640][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.651][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.652][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.657][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.658][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.660][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.664][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.670][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.676][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.677][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:51.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.687][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.688][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.694][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.694][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.696][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.702][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-08-10 16:02:51.703][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:51.704][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:51.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:51.719][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.720][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.721][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.726][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.726][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:51.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.732][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:51.733][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.738][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:51.739][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.745][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:51.745][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.751][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.752][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.753][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:51.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.791][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-08-10 16:02:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:51.807][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:51.808][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-08-10 16:02:51.809][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:51.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-08-10 16:02:51.811][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:51.811][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:51.812][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:51.813][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:51.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:51.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:51.817][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:51.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:51.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:51.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:51.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:51.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:51.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:51.825][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-08-10 16:02:51.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:51.828][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:51.829][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-08-10 16:02:53.227][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-08-10 16:02:54.703][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:54.704][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-08-10 16:02:54.707][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-08-10 16:02:54.709][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-08-10 16:02:54.711][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:54.712][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:54.713][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:54.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:54.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:54.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:54.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:54.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:54.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:54.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.747][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:54.748][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.750][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:54.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:54.781][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-08-10 16:02:54.782][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.787][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.790][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:54.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:54.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:54.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:54.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:54.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:54.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.870][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.873][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.876][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:54.877][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.887][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:54.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.890][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.896][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:54.897][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.899][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:54.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:54.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.916][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.920][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.921][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.923][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:54.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.941][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.942][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:54.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:54.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.956][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:54.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:54.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:54.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:54.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.962][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:54.963][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:54.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:54.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:54.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.983][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:54.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:54.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.000][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.003][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:55.004][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.005][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:55.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.016][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.021][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.022][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.051][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:55.052][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:55.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.058][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.064][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:55.065][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:55.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.070][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:55.071][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:55.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.076][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:55.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:55.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.081][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.082][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.087][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.088][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.090][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.095][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-08-10 16:02:55.096][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:55.097][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:55.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:55.112][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.113][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.118][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:55.119][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:55.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:55.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:55.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.124][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:55.125][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:55.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.127][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:55.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:55.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.130][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:55.131][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:55.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.136][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:55.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:55.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:55.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.142][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.143][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:55.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:55.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.182][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-08-10 16:02:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.186][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:55.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:55.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:55.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:55.198][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-08-10 16:02:55.199][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-08-10 16:02:55.199][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:02:55.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-08-10 16:02:55.201][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:02:55.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:02:55.203][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:55.204][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:02:55.204][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:02:55.205][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-08-10 16:02:55.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:55.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:55.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:55.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:55.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:55.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:55.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:02:55.215][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-08-10 16:02:55.217][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:02:55.218][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:02:55.219][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-08-10 16:02:56.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-08-10 16:02:57.755][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:02:57.757][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-08-10 16:02:57.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-08-10 16:02:57.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-08-10 16:02:57.763][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:02:57.764][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:57.765][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-08-10 16:02:57.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:57.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:57.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:57.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:57.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:57.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:57.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:57.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.787][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:57.788][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.790][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:57.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:57.822][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-08-10 16:02:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.828][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:57.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.831][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:57.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:57.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:57.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.837][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:57.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:57.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.905][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:57.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.919][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.925][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:57.926][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.928][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:57.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:57.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.942][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.945][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:57.946][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.947][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:57.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.957][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.966][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.966][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.968][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:57.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.986][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.987][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:57.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:57.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:57.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:57.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.001][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.003][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.006][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.007][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.009][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.041][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.044][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.047][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:58.048][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.050][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-08-10 16:02:58.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.059][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.060][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.061][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.065][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.066][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.067][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.071][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.077][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.078][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.079][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.083][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.084][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:58.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.095][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.096][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.101][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.102][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.107][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-08-10 16:02:58.108][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:02:58.109][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:58.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.119][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.125][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.126][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.128][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.131][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.132][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.134][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.135][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.136][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.140][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.147][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.148][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.149][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.179][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-08-10 16:02:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:58.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.191][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:58.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:58.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:58.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.197][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:58.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:58.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.272][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.272][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.292][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.292][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.304][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.306][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.310][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.310][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.315][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.316][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.317][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:58.324][biodb::testThat]
biodb.INFO [2024-08-10 16:02:58.324][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:02:58.325][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:58.326][biodb::testThat]
biodb.DEBUG[2024-08-10 16:02:58.327][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-08-10 16:02:58.328][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-08-10 16:02:58.329][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-08-10 16:02:58.331][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-08-10 16:02:58.362][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-08-10 16:02:58.364][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:02:58.364][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-08-10 16:02:58.365][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-08-10 16:02:58.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.383][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.385][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.389][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.390][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.395][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.396][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.399][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.402][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.402][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.404][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.405][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.408][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.414][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.415][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.418][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.475][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.476][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.479][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.481][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.482][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.487][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.488][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.489][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.491][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.493][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.499][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.500][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.555][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.561][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.562][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.565][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.568][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.568][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.571][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.574][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.575][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.578][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.580][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.584][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.587][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.588][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.640][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.646][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.647][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.652][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.653][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.659][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.660][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.662][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.665][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.666][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.672][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.672][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.738][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.741][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.746][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.746][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.748][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.752][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.753][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.759][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.760][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.766][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.767][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.770][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.773][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.774][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.835][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.835][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.841][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.841][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.847][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.847][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.850][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.853][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.853][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.859][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.865][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.865][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.869][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.910][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.917][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.917][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.923][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.923][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.929][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.929][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.935][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:58.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.941][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.942][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.945][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:58.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:58.972][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:02:58.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:02:58.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:02:58.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:02:58.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:02:58.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:02:58.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:02:58.981][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.983][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.987][ef$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.988][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-08-10 16:02:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-08-10 16:02:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.993][ef$get] Asked field names are: location.
biodb.TRACE[2024-08-10 16:02:58.994][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-08-10 16:02:58.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.995][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.996][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:58.997][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:58.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:58.998][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-08-10 16:02:59.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-08-10 16:02:59.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.002][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-08-10 16:02:59.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.005][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:59.005][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-08-10 16:02:59.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-08-10 16:02:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:02:59.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:02:59.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.102][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-08-10 16:02:59.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.122][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:02:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:02:59.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:02:59.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:59.206][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.206][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:02:59.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.208][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:59.210][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.212][ef$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.213][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-08-10 16:02:59.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.234][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-08-10 16:02:59.239][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-08-10 16:02:59.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:59.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-08-10 16:02:59.243][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:59.244][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-08-10 16:02:59.245][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-08-10 16:02:59.258][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.259][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:02:59.260][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.260][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:02:59.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:02:59.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.297][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-08-10 16:02:59.299][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:02:59.300][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-08-10 16:02:59.301][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:02:59.302][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-08-10 16:02:59.313][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.314][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:02:59.315][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.316][biodb::testThat]
biodb.TRACE[2024-08-10 16:02:59.323][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.326][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:02:59.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:02:59.338][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-08-10 16:02:59.339][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.342][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.345][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.354][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.356][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:59.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:59.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.360][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.363][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:02:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:02:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.376][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:02:59.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:02:59.378][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:59.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:02:59.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:02:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:02:59.386][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.386][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:02:59.387][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.388][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.396][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.397][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:02:59.397][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.398][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.404][biodb::testThat]
biodb.INFO [2024-08-10 16:02:59.404][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:02:59.405][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:02:59.406][biodb::testThat]
biodb.DEBUG[2024-08-10 16:02:59.409][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-08-10 16:03:02.311][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-08-10 16:03:05.575][biodb::testThat]
biodb.INFO [2024-08-10 16:03:05.576][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:03:05.577][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:05.577][biodb::testThat]
biodb.INFO [2024-08-10 16:03:05.582][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:03:05.583][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-08-10 16:03:05.584][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-08-10 16:03:05.585][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-08-10 16:03:05.590][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-08-10 16:03:05.591][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:03:05.591][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.592][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.594][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-08-10 16:03:05.597][biodb::testContext]
biodb.INFO [2024-08-10 16:03:05.598][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:03:05.598][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-08-10 16:03:05.599][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:03:05.600][biodb::testContext]
biodb.INFO [2024-08-10 16:03:05.601][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:03:05.602][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:03:05.605][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:05.606][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:03:05.607][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.609][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:03:05.621][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.624][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:03:05.625][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.627][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:03:05.628][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:03:05.629][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:03:05.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.632][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:03:05.633][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:03:05.633][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.636][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:03:05.637][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:03:05.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.639][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:03:05.640][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:03:05.641][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:03:05.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.644][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:03:05.644][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.647][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:03:05.648][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:03:05.648][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:03:05.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.651][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:03:05.651][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:03:05.652][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:03:05.653][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:03:05.654][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:03:05.654][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:03:05.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.657][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:03:05.658][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:03:05.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.660][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:03:05.661][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:03:05.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.663][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:03:05.664][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:03:05.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.667][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:03:05.668][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:03:05.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.670][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:03:05.671][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:03:05.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.673][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:03:05.674][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:03:05.689][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:03:05.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.692][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:03:05.693][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:03:05.693][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:03:05.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.696][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:03:05.697][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.698][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:03:05.699][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.700][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:05.700][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.701][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.702][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.702][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.703][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:03:05.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:05.705][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.705][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:03:05.706][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:05.707][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.707][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.708][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:05.708][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:05.708][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:05.708][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:03:05.708][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:03:05.709][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:05.710][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.710][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.711][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:05.712][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.712][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.713][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.714][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.714][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:05.715][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:05.716][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.716][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.717][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:03:05.718][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.719][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:03:05.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:05.721][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.722][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.723][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.723][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.724][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:03:05.725][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:05.726][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.726][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:03:05.727][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:05.728][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:03:05.729][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:03:05.730][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:05.731][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.732][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.732][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:05.733][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.734][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.734][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.735][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.736][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:05.736][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:05.737][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.738][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.738][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:03:05.740][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.740][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:03:05.741][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.742][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:05.743][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.743][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.744][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.745][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.745][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:03:05.746][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:05.747][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.748][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:03:05.748][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:05.749][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.750][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.751][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.751][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:05.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.753][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:05.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.755][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.756][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.757][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:05.757][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:05.758][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.759][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.760][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:03:05.761][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.762][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:03:05.763][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:05.764][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.766][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.767][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:03:05.768][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:05.769][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.770][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:03:05.770][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:05.771][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.772][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:05.772][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.773][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:05.774][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.774][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.775][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:05.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:05.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:05.777][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:05.778][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.778][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:05.779][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:05.780][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:05.781][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:05.781][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:05.782][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.824][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.843][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:03:05.844][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:03:05.845][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:03:05.846][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:03:05.847][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:03:05.848][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:03:05.849][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:03:05.849][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:03:05.850][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:03:05.851][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:03:05.852][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:03:05.853][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:03:05.854][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:03:05.855][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:03:05.856][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:03:05.857][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:03:05.858][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:03:05.859][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:03:05.860][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:03:05.861][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:03:05.862][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:03:05.863][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:03:05.864][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:03:05.865][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:03:05.866][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:03:05.866][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:03:05.867][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:03:05.868][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:03:05.869][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:03:05.870][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:03:05.871][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:03:05.872][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:03:05.873][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:03:05.874][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:03:05.875][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:03:05.876][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:03:05.877][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:03:05.878][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:03:05.879][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:03:05.880][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:03:05.881][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:03:05.882][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:03:05.883][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:03:05.884][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:03:05.885][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:03:05.886][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:03:05.887][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:03:05.888][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:03:05.889][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:03:05.890][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:03:05.891][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:03:05.892][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:03:05.893][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:03:05.894][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:03:05.895][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:03:05.896][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:03:05.897][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:03:05.897][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:03:05.898][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:03:05.899][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:03:05.900][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:03:05.901][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:03:05.902][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:03:05.903][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:03:05.904][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:03:05.905][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:03:05.906][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:03:05.907][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:03:05.908][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:03:05.909][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:03:05.910][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:03:05.911][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:03:05.912][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:03:05.913][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:03:05.914][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:03:05.915][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:03:05.916][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:03:05.917][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:03:05.918][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:03:05.919][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:03:05.920][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:03:05.921][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:03:05.922][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:03:05.923][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:03:05.924][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:03:05.925][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:05.926][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.927][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.995][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:05.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:05.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:05.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:05.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:05.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:05.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:05.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:06.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:06.004][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-08-10 16:03:06.006][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:03:06.007][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.008][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-08-10 16:03:06.009][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.010][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:06.010][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.011][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.012][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.013][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.013][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-08-10 16:03:06.014][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:06.015][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.016][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-08-10 16:03:06.016][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:06.017][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-08-10 16:03:06.017][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-08-10 16:03:06.018][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:06.018][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:06.019][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:03:06.020][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.020][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.021][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:06.022][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.022][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.023][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.024][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:03:06.024][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-08-10 16:03:06.024][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:06.025][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:06.026][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.026][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:06.027][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:03:06.029][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.030][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-08-10 16:03:06.030][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.031][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:06.032][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.032][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.033][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.034][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.034][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:06.035][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:06.036][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.037][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-08-10 16:03:06.037][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-08-10 16:03:06.038][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-08-10 16:03:06.039][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:06.040][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:06.040][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:03:06.041][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.047][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:06.048][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.048][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.049][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.050][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:06.050][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:06.050][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:06.051][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:06.052][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.052][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:06.053][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:03:06.054][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:06.055][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-08-10 16:03:06.056][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.056][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:06.057][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.058][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.058][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.059][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.060][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:06.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:06.061][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.062][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-08-10 16:03:06.062][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.063][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:06.064][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:06.065][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:06.065][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:06.065][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:06.065][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:03:06.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.067][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:06.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.069][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.070][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:06.070][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:06.070][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:03:06.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:06.071][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:06.072][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.073][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:06.073][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:03:06.075][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.075][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-08-10 16:03:06.076][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.077][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:06.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.078][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.079][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.080][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.080][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:06.081][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:06.082][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.082][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-08-10 16:03:06.083][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:06.084][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-08-10 16:03:06.084][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:03:06.084][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:06.085][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:06.086][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:03:06.087][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.087][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.088][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:06.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:06.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:06.090][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:06.090][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:06.090][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:06.090][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:03:06.091][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:06.092][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:06.092][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:06.093][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:06.097][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-08-10 16:03:06.098][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:03:06.099][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:03:06.100][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-08-10 16:03:06.101][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:03:06.102][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-08-10 16:03:06.108][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:03:06.109][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-08-10 16:03:06.109][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:03:06.110][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-08-10 16:03:06.111][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:06.112][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:06.113][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-08-10 16:03:06.114][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:06.115][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:06.116][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:06.119][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-08-10 16:03:06.123][biodb::testThat]
biodb.INFO [2024-08-10 16:03:06.123][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:03:06.124][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:06.125][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:06.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-08-10 16:03:06.127][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:06.130][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:06.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.141][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.155][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.156][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.158][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.162][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.162][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.168][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.169][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.175][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.180][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.180][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.185][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.186][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.191][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.192][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.198][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.203][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.204][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.209][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.210][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.215][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.221][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.222][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.224][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.227][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:06.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:06.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.312][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-08-10 16:03:06.314][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:06.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:06.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.325][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:06.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:06.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.331][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:06.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:06.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.408][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.408][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.410][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.428][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.429][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.469][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.470][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.489][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.490][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.510][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.510][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.530][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.550][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.550][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.574][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.575][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.594][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.595][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.614][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.614][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.654][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.674][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.685][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.691][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.692][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.697][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.697][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.702][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.703][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.704][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.708][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.709][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.714][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.714][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.722][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.725][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.726][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.727][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.731][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.733][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.736][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.737][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.742][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.748][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.753][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.759][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.759][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.764][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.765][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.770][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-08-10 16:03:06.771][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:06.772][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:06.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:06.774][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:06.775][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:06.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:06.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:06.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:06.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:06.782][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.783][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.788][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.789][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.794][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.795][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.796][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.806][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.807][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.812][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.813][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.814][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.823][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.826][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:06.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.829][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.831][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:06.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:06.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.840][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.841][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.842][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:06.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.846][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.846][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.848][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:06.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:06.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.851][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.857][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.858][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:06.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.863][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.864][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:06.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:06.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.894][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:06.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:06.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:06.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:06.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:06.943][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-08-10 16:03:06.951][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.954][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:06.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.968][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:06.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:06.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:06.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:06.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:06.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.025][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.027][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.046][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.071][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.072][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.073][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.091][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.112][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.112][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.131][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.132][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.152][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.153][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.172][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.173][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.214][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.234][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.254][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.254][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.274][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.274][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.294][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.295][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.337][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.342][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.343][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.348][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.349][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.354][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.354][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.359][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.360][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.365][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.366][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.371][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.377][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.382][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.383][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.384][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.388][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.394][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.396][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.399][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.401][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.405][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.406][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.411][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.412][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.413][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:07.419][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.420][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:03:07.421][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.421][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:07.423][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-08-10 16:03:07.424][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:07.426][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-08-10 16:03:07.428][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-08-10 16:03:07.430][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-08-10 16:03:07.431][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:07.432][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:07.433][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:07.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.439][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.449][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.450][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.455][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.455][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.461][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.461][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.466][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.467][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.472][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.473][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.478][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:07.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.484][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.484][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.501][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.502][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.507][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:07.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.513][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.513][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.518][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.519][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:07.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:07.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:07.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:07.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:07.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:07.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:07.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:07.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:07.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:07.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.609][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.610][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.615][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.615][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.620][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.621][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.626][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.632][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.633][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.638][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:07.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:07.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.643][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:07.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.655][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.660][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.661][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.666][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:07.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.672][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.673][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.678][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.679][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:07.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:07.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:07.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:07.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:07.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:07.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:07.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:07.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.767][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-08-10 16:03:07.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:07.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:07.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:07.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:07.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:07.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:07.795][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.795][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:03:07.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.797][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:07.799][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.800][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.801][ef$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.802][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-08-10 16:03:07.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.823][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-08-10 16:03:07.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-08-10 16:03:07.830][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:07.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-08-10 16:03:07.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:07.834][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-08-10 16:03:07.835][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-08-10 16:03:07.845][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:07.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.852][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.853][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:07.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.854][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:07.858][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.859][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:03:07.859][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.860][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:07.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-08-10 16:03:07.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:07.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-08-10 16:03:07.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:07.903][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-08-10 16:03:07.915][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.916][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:03:07.917][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.917][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.928][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.934][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.940][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:07.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:07.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:07.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:07.972][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.973][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:03:07.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.975][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.981][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.982][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:03:07.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.983][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.990][biodb::testThat]
biodb.INFO [2024-08-10 16:03:07.991][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:03:07.991][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:07.992][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:07.994][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-08-10 16:03:14.424][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-08-10 16:03:14.605][biodb::testThat]
biodb.INFO [2024-08-10 16:03:14.606][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:03:14.607][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:14.608][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:14.771][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-08-10 16:03:14.874][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.880][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:14.881][biodb::testThat]
biodb.INFO [2024-08-10 16:03:14.882][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-08-10 16:03:14.882][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:14.883][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:14.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:14.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-08-10 16:03:14.979][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:14.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-08-10 16:03:14.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:14.982][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-08-10 16:03:15.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-08-10 16:03:15.033][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-08-10 16:03:15.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.036][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-08-10 16:03:15.047][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:15.078][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.079][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:15.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.081][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:15.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.094][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.095][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-08-10 16:03:15.096][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.098][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-08-10 16:03:15.319][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.321][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-08-10 16:03:15.323][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.325][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-08-10 16:03:15.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.345][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-08-10 16:03:15.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-08-10 16:03:15.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:15.399][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.400][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-08-10 16:03:15.401][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.402][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-08-10 16:03:15.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.416][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.417][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-08-10 16:03:15.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.419][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-08-10 16:03:15.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-08-10 16:03:15.436][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.438][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-08-10 16:03:15.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-08-10 16:03:15.457][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.458][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-08-10 16:03:15.459][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.461][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-08-10 16:03:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:15.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:15.484][biodb::testThat]
biodb.INFO [2024-08-10 16:03:15.485][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-08-10 16:03:15.486][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:15.486][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:15.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:15.533][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:15.535][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:15.536][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:15.537][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:15.538][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:15.539][private$loadEntries] Creating entries from ids [3]: "171904710, 171871699, 171853737".
biodb.DEBUG[2024-08-10 16:03:15.540][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:03:15.541][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171904710, 171871699, 171853737".
biodb.TRACE[2024-08-10 16:03:15.542][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-08-10 16:03:15.544][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904710.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171871699.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171853737.xml".
biodb.DEBUG[2024-08-10 16:03:15.545][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:15.546][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:03:15.547][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:15.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.557][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.564][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.565][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.570][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.571][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.576][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.577][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.583][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.588][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.589][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.595][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.598][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.601][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.603][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.613][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.614][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.619][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.620][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.622][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.625][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.631][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.632][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.638][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.639][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:15.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:15.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:15.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:15.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.726][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.728][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.732][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.733][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.738][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.739][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.744][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.745][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.750][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.751][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.753][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.762][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.766][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.768][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.774][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.780][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.786][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.787][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.792][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.799][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.799][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.805][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.805][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:15.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:15.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:15.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:15.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:15.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:15.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:15.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:15.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:15.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:15.892][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.898][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.905][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.906][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:15.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.911][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.912][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.917][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.917][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:15.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.923][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.924][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.929][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.935][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:15.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.941][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.942][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:15.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.953][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.953][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.959][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.960][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:15.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:15.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.965][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.966][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.972][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:15.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:15.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.987][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:15.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:15.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:15.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:15.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:16.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:16.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:16.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.005][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:16.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:16.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:16.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:16.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:16.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.014][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:16.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:16.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:16.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:16.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:16.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:16.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:16.073][self$createEntryFromContent] Accession numbers: 171904710, 171871699, 171853737.
biodb.DEBUG[2024-08-10 16:03:16.074][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:16.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:16.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.091][private$selectFields]
biodb.TRACE[2024-08-10 16:03:16.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:16.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:16.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.100][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.104][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:16.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:16.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:16.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.142][private$selectFields]
biodb.TRACE[2024-08-10 16:03:16.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:16.143][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:16.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.151][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.155][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:16.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.165][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-08-10 16:03:16.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:16.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.180][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.181][private$selectFields]
biodb.TRACE[2024-08-10 16:03:16.182][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:16.183][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:16.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.190][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.191][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:16.192][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.193][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.195][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:16.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:16.206][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853737].
biodb.DEBUG[2024-08-10 16:03:16.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:16.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:16.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:16.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:16.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:16.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:16.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:16.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:16.225][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:16.226][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:16.227][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:16.403][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:16.404][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:16.405][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:16.406][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:16.554][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:16.556][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-08-10 16:03:16.559][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-08-10 16:03:16.561][private$loadEntries] Creating entries from ids [3]: "171901106, 171901072, 171877309".
biodb.DEBUG[2024-08-10 16:03:16.562][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:03:16.563][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171901106, 171901072, 171877309".
biodb.TRACE[2024-08-10 16:03:16.564][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:16.565][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:16.566][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:16.566][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:16.567][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:16.568][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:16.569][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-08-10 16:03:16.570][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML".
biodb.DEBUG[2024-08-10 16:03:16.572][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:16.573][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:16.573][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML".
biodb.TRACE[2024-08-10 16:03:16.753][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171901106,171901072,171877309/XML).
biodb.TRACE[2024-08-10 16:03:16.992][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171901106.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171901072.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171877309.xml"
biodb.DEBUG[2024-08-10 16:03:16.994][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:16.996][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:03:16.996][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:16.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:16.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:16.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.005][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.010][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.021][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.022][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.029][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.036][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.041][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.042][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.044][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.048][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.049][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.051][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.054][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.056][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.061][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.063][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.066][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.067][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.072][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.073][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.075][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.079][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.079][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.085][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.091][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:17.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.115][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:17.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.133][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:17.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.142][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.184][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.190][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.191][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.197][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.197][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.204][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.209][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.210][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.212][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.216][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.216][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.222][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.228][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.235][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.241][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.247][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.247][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.250][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.253][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.254][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.259][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.260][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.262][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.265][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.266][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.267][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.271][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.289][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:17.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.306][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:17.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.349][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.350][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.351][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.355][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.356][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.362][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.362][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.374][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.374][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.380][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.381][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.382][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.386][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.387][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.388][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.392][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.395][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.412][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.422][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.428][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.429][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.434][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.440][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:17.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:17.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:17.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.535][self$createEntryFromContent] Accession numbers: 171901106, 171901072, 171877309.
biodb.DEBUG[2024-08-10 16:03:17.552][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:17.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.585][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.600][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.603][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:17.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:17.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.628][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.629][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.630][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.637][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.641][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:17.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.667][private$selectFields]
biodb.TRACE[2024-08-10 16:03:17.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:17.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:17.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.672][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.675][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.676][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:17.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:17.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-08-10 16:03:17.690][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:17.691][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:17.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:17.774][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:17.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:17.776][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:17.777][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:17.779][private$loadEntries] Creating entries from ids [3]: "171853852, 171846466, 171834268".
biodb.DEBUG[2024-08-10 16:03:17.780][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:03:17.781][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171853852, 171846466, 171834268".
biodb.TRACE[2024-08-10 16:03:17.782][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-08-10 16:03:17.784][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171853852.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171846466.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171834268.xml".
biodb.DEBUG[2024-08-10 16:03:17.785][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:17.786][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:03:17.787][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:17.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.798][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.799][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.800][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.804][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.805][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.806][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.810][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.811][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.816][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.817][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.822][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.835][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.835][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.837][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.841][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.846][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:17.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:17.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.865][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.866][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.868][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:17.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:17.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.871][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:17.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:17.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.877][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.878][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.883][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.884][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.886][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.889][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:17.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.898][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:17.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.907][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:17.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.916][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:17.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.925][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:17.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:17.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:17.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:17.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:17.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:17.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:17.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:17.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:17.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:17.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:17.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:17.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:17.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.973][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.974][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.979][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.980][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.985][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.986][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:17.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.992][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.992][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:17.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:17.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:17.998][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:17.999][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.004][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:18.005][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.008][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:18.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.011][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.018][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.030][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:18.031][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:18.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:18.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.036][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:18.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:18.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.043][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.049][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.050][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.056][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.064][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:18.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:18.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.087][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:18.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.096][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:18.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.139][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.145][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.146][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.153][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.158][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.159][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.161][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.165][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.167][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.171][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.172][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.173][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.177][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:18.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.179][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:18.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.183][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:18.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:18.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:18.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:18.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:18.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.202][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:18.203][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:18.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:18.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:18.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.209][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:18.210][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.215][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:18.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.221][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.222][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:18.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:18.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:18.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:18.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:18.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:18.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:18.331][self$createEntryFromContent] Accession numbers: 171853852, 171846466, 171834268.
biodb.DEBUG[2024-08-10 16:03:18.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:18.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.349][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.358][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.359][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.362][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:18.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:18.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.389][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.390][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.399][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.402][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.402][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-08-10 16:03:18.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:18.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.428][private$selectFields]
biodb.TRACE[2024-08-10 16:03:18.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:18.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:18.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.436][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:18.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.440][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:18.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:18.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:18.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-08-10 16:03:18.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:18.452][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:18.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:18.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:18.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:18.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:18.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:18.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:18.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:18.467][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:18.469][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:18.470][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:18.471][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:18.547][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:18.548][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:18.549][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:18.551][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:18.661][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:18.663][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-08-10 16:03:18.666][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-08-10 16:03:18.668][private$loadEntries] Creating entries from ids [3]: "171900686, 171900685, 171900684".
biodb.DEBUG[2024-08-10 16:03:18.669][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:03:18.670][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171900686, 171900685, 171900684".
biodb.TRACE[2024-08-10 16:03:18.671][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:18.672][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:18.672][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:18.673][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:18.674][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:18.674][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:18.687][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-08-10 16:03:18.688][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171900686,171900685,171900684/XML".
biodb.DEBUG[2024-08-10 16:03:18.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:18.691][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:18.691][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171900686,171900685,171900684/XML".
biodb.TRACE[2024-08-10 16:03:18.830][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171900686,171900685,171900684/XML).
biodb.TRACE[2024-08-10 16:03:19.078][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171900686.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171900685.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171900684.xml"
biodb.DEBUG[2024-08-10 16:03:19.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:19.081][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:03:19.081][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:19.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.092][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.098][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.099][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.105][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.111][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.112][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.117][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.118][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.123][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.124][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.139][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.157][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.162][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.163][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.165][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.168][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.169][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.174][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.175][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.176][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.180][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.181][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:19.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:19.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.263][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.269][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.275][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.275][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.281][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.282][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.293][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.294][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.299][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.305][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.323][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.324][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.329][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.330][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.335][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.336][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.341][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.342][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:19.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.356][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:19.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.365][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:19.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:19.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.429][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.430][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.431][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.435][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.436][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.441][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.442][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.447][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.448][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.460][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.461][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.466][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.485][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.491][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.491][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.497][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.503][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.503][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.509][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.510][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.511][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.515][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:19.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.533][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:19.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.541][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:19.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.550][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:19.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.615][self$createEntryFromContent] Accession numbers: 171900686, 171900685, 171900684.
biodb.DEBUG[2024-08-10 16:03:19.615][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:19.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.632][private$selectFields]
biodb.TRACE[2024-08-10 16:03:19.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:19.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:19.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.640][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.643][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.644][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:19.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:19.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.670][private$selectFields]
biodb.TRACE[2024-08-10 16:03:19.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:19.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:19.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.675][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.679][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.680][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.682][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:19.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:19.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.708][private$selectFields]
biodb.TRACE[2024-08-10 16:03:19.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:19.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:19.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.713][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.717][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:19.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.721][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900684].
biodb.DEBUG[2024-08-10 16:03:19.731][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:19.732][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:19.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.742][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:19.748][biodb::testThat]
biodb.INFO [2024-08-10 16:03:19.748][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-08-10 16:03:19.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:19.750][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:19.752][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:19.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:19.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.755][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:19.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:19.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:19.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:19.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:19.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-08-10 16:03:19.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:19.801][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-08-10 16:03:19.802][private$loadEntries] Creating entries from ids [3]: "171786885, 171632701, 171615005".
biodb.DEBUG[2024-08-10 16:03:19.803][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-08-10 16:03:19.804][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171786885, 171632701, 171615005".
biodb.TRACE[2024-08-10 16:03:19.805][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-08-10 16:03:19.807][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171786885.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171632701.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615005.xml".
biodb.DEBUG[2024-08-10 16:03:19.808][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:19.809][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-08-10 16:03:19.810][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:19.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.827][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.828][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.829][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.833][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.833][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.839][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.840][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.856][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.857][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.859][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.863][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.865][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.866][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:19.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:19.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.869][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:19.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.875][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.878][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:19.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:19.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.881][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.882][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:19.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.887][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.887][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.889][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:19.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.893][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.899][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.900][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.905][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.905][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:19.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:19.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:19.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:19.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:19.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.936][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:19.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:19.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.945][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:19.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:19.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:19.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:19.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:19.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:19.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:19.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:19.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:19.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:19.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:19.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:19.986][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:19.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:19.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.992][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:19.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:19.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:19.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.004][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.005][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.007][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.010][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.011][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.013][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.017][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.018][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.019][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.023][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:20.024][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.025][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.026][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:20.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.029][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.030][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.041][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.042][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.047][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:20.048][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:20.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.050][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:20.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:20.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.053][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:20.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.059][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.060][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.062][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.066][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:20.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:20.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.154][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.155][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.160][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.161][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.166][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.167][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.172][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.173][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.179][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.179][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.181][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.185][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.186][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.187][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.191][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:20.192][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:20.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.197][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.200][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:20.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:20.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:20.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.215][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:20.216][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:20.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.218][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:20.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:20.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.221][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:20.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:20.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:20.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.234][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.234][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:20.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.240][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:20.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.249][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:20.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.258][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:20.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:20.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:20.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:20.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:20.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:20.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:20.341][self$createEntryFromContent] Accession numbers: 171786885, 171632701, 171615005.
biodb.DEBUG[2024-08-10 16:03:20.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:20.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.356][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.357][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.359][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.360][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.366][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.370][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.380][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171786885].
biodb.DEBUG[2024-08-10 16:03:20.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.395][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.398][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.399][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.404][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.405][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.408][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:20.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-08-10 16:03:20.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.433][private$selectFields]
biodb.TRACE[2024-08-10 16:03:20.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:20.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:20.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.438][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.441][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.442][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:20.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:20.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:20.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-08-10 16:03:20.456][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:20.457][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:20.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:20.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:20.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:20.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:20.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:20.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:20.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:20.471][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:20.473][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:20.474][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:20.475][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:20.549][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:20.549][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:20.551][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:20.552][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:20.694][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:20.696][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-08-10 16:03:20.699][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-08-10 16:03:20.701][private$loadEntries] Creating entries from ids [1]: "171868264".
biodb.DEBUG[2024-08-10 16:03:20.702][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:20.703][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171868264".
biodb.TRACE[2024-08-10 16:03:20.704][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:20.705][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:20.706][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:20.707][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:20.708][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:20.708][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:20.709][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-08-10 16:03:20.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML".
biodb.DEBUG[2024-08-10 16:03:20.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:20.713][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:20.714][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML".
biodb.TRACE[2024-08-10 16:03:20.856][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868264/XML).
biodb.TRACE[2024-08-10 16:03:21.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868264.xml"
biodb.DEBUG[2024-08-10 16:03:21.024][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:21.025][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:21.026][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:21.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.037][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.043][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.044][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.045][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.049][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.050][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.056][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.058][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.062][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.062][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.064][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.068][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.069][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.070][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.074][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:21.075][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.076][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.077][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.080][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.086][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.087][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.108][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:21.108][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:21.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:21.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.114][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:21.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:21.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.126][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.127][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.132][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:21.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.149][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:21.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.167][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:21.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:21.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:21.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.208][self$createEntryFromContent] Accession numbers: 171868264.
biodb.DEBUG[2024-08-10 16:03:21.209][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:21.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.253][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.253][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.258][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.268][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.272][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:21.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.297][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.298][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.307][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.310][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-08-10 16:03:21.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.341][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.341][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.343][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.346][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.347][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.348][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.349][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.350][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.354][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.363][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868264].
biodb.DEBUG[2024-08-10 16:03:21.364][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:21.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:21.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.410][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:21.413][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:21.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-08-10 16:03:21.414][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:21.416][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-08-10 16:03:21.417][private$loadEntries] Creating entries from ids [1]: "171828390".
biodb.DEBUG[2024-08-10 16:03:21.418][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:21.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171828390".
biodb.TRACE[2024-08-10 16:03:21.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:21.421][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171828390.xml".
biodb.DEBUG[2024-08-10 16:03:21.422][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:21.423][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:21.424][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:21.425][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.435][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.437][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.440][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.441][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.447][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.448][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.449][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.453][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.453][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.459][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.460][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.465][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.466][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.471][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:21.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.477][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:21.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:21.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:21.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:21.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.496][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:21.496][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:21.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:21.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:21.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.502][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:21.502][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:21.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.508][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.508][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.514][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.514][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:21.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:21.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:21.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.555][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:21.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:21.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:21.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:21.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:21.601][self$createEntryFromContent] Accession numbers: 171828390.
biodb.DEBUG[2024-08-10 16:03:21.602][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:21.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.617][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.618][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.619][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-08-10 16:03:21.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.656][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.664][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.665][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-08-10 16:03:21.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.694][private$selectFields]
biodb.TRACE[2024-08-10 16:03:21.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:21.695][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:21.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.697][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.703][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:21.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.707][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:21.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:21.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:21.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:21.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171828390].
biodb.DEBUG[2024-08-10 16:03:21.717][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:21.718][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:21.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:21.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:21.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:21.725][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:21.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:21.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:21.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:21.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:21.734][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:21.735][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:21.736][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:21.817][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:21.817][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:21.819][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:21.820][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:21.920][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:21.922][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-08-10 16:03:21.925][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-08-10 16:03:21.927][private$loadEntries] Creating entries from ids [2]: "171868263, 171868262".
biodb.DEBUG[2024-08-10 16:03:21.927][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:21.929][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171868263, 171868262".
biodb.TRACE[2024-08-10 16:03:21.929][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:21.930][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:21.931][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:21.932][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:21.932][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:21.933][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:21.934][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-08-10 16:03:21.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML".
biodb.DEBUG[2024-08-10 16:03:21.937][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:21.937][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:21.938][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML".
biodb.TRACE[2024-08-10 16:03:22.096][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171868263,171868262/XML).
biodb.TRACE[2024-08-10 16:03:22.278][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868263.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171868262.xml"
biodb.DEBUG[2024-08-10 16:03:22.280][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:22.281][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:22.282][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:22.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.300][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.301][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.321][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.323][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.324][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.328][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.329][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.330][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.334][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.335][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.340][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:22.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.343][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.343][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:22.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.347][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.349][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.353][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.359][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.360][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.365][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:22.366][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:22.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.368][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:22.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:22.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.371][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:22.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.378][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.384][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.384][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:22.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.476][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.476][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.478][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.482][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.483][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.495][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.501][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.507][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:22.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.510][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:22.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.513][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.514][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:22.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:22.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:22.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:22.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.531][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:22.532][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:22.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.537][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:22.538][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.544][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.544][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.546][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.550][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.550][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.552][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.556][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:22.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:22.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.602][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.611][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:22.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:22.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.681][self$createEntryFromContent] Accession numbers: 171868263, 171868262.
biodb.DEBUG[2024-08-10 16:03:22.681][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:22.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.697][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.698][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.699][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.702][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.707][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.710][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.711][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.721][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868264].
biodb.DEBUG[2024-08-10 16:03:22.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.738][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.740][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.748][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.751][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868263].
biodb.DEBUG[2024-08-10 16:03:22.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.777][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.778][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.782][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.787][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.790][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.791][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.802][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171868262].
biodb.DEBUG[2024-08-10 16:03:22.803][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:22.803][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:22.811][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:22.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:22.821][biodb::testThat]
biodb.INFO [2024-08-10 16:03:22.822][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-08-10 16:03:22.822][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:22.823][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.829][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:22.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:22.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:22.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:22.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:22.880][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:22.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:22.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:22.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:22.885][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:22.887][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:22.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.903][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.912][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.915][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.916][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:22.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.941][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.950][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.954][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.964][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-08-10 16:03:22.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:22.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:22.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:22.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:22.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:22.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:22.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:22.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.980][private$selectFields]
biodb.TRACE[2024-08-10 16:03:22.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:22.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:22.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:22.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.991][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.993][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:22.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:22.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:22.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.003][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853737].
biodb.DEBUG[2024-08-10 16:03:23.003][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:23.004][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:23.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.007][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.018][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:23.021][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:23.022][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-08-10 16:03:23.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:23.023][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-08-10 16:03:23.025][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:23.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.040][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.050][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.054][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:23.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.079][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.081][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.084][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.087][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.088][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.089][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:23.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.118][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.124][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.125][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.129][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.134][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.138][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-08-10 16:03:23.148][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:23.149][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:23.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:23.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:23.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:23.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:23.211][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:23.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:23.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.229][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.238][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.239][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.242][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:23.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.268][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.269][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.270][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.273][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.276][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.278][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.281][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-08-10 16:03:23.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.307][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.308][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.310][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.312][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.315][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.316][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.320][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-08-10 16:03:23.331][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:23.331][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:23.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:23.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:23.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-08-10 16:03:23.350][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:23.351][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-08-10 16:03:23.352][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:23.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.354][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.369][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.377][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.382][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:23.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.415][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.420][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.424][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:23.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.454][private$selectFields]
biodb.TRACE[2024-08-10 16:03:23.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:23.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:23.456][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.464][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:23.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.466][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.467][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:23.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900684].
biodb.DEBUG[2024-08-10 16:03:23.478][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:23.478][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:23.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:23.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.504][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:23.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.507][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.509][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:23.510][biodb::testThat]
biodb.INFO [2024-08-10 16:03:23.511][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-08-10 16:03:23.512][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:23.512][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.517][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:23.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:23.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:23.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:23.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:23.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:23.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:23.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:23.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:23.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:23.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:23.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:23.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:23.558][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:23.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:23.561][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:23.562][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:23.640][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:23.641][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:23.642][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:23.643][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:23.737][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:23.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-08-10 16:03:23.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-08-10 16:03:23.743][private$loadEntries] Creating entries from ids [2]: "171904736, 171904729".
biodb.DEBUG[2024-08-10 16:03:23.744][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:23.745][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171904736, 171904729".
biodb.TRACE[2024-08-10 16:03:23.746][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:23.747][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:23.748][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:23.749][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:23.750][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:23.750][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:23.751][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-08-10 16:03:23.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904736,171904729/XML".
biodb.DEBUG[2024-08-10 16:03:23.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:23.755][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:23.756][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904736,171904729/XML".
biodb.TRACE[2024-08-10 16:03:23.902][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904736,171904729/XML).
biodb.TRACE[2024-08-10 16:03:24.109][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904736.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904729.xml"
biodb.DEBUG[2024-08-10 16:03:24.111][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:24.112][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:24.113][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:24.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.131][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.132][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.133][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.137][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.138][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.143][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.144][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.149][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.150][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.155][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.156][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.161][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:24.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.164][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.164][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:24.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.167][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.168][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.170][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.183][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.184][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.185][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.196][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:24.196][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:24.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.199][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:24.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:24.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.202][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:24.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:24.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.208][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.208][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.214][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.215][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.229][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.238][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:24.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.252][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:24.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:24.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:24.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.298][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.300][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.305][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.306][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.311][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.312][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.317][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.318][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.324][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.324][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.331][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.336][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:24.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.338][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.339][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:24.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.342][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.343][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:24.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:24.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.360][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:24.361][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:24.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.363][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.366][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:24.367][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:24.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:24.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.373][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.379][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.380][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.382][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:24.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.385][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:24.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:24.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:24.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:24.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:24.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:24.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.421][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:24.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:24.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:24.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:24.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:24.478][self$createEntryFromContent] Accession numbers: 171904736, 171904729.
biodb.DEBUG[2024-08-10 16:03:24.479][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:24.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.496][private$selectFields]
biodb.TRACE[2024-08-10 16:03:24.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:24.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:24.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.503][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.504][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.505][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.508][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.509][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904736].
biodb.DEBUG[2024-08-10 16:03:24.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.535][private$selectFields]
biodb.TRACE[2024-08-10 16:03:24.536][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:24.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:24.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.544][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.548][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904729].
biodb.DEBUG[2024-08-10 16:03:24.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:24.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.574][private$selectFields]
biodb.TRACE[2024-08-10 16:03:24.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:24.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:24.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.583][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:24.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.587][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:24.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:24.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:24.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:24.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:24.598][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:24.598][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:24.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:24.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:24.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:24.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:24.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:24.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:24.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:24.612][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:24.614][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:24.615][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:24.616][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:24.693][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:24.694][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:24.695][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:24.696][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:24.837][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:24.838][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-08-10 16:03:24.841][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-08-10 16:03:24.843][private$loadEntries] Creating entries from ids [2]: "171904731, 171904523".
biodb.DEBUG[2024-08-10 16:03:24.844][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:24.845][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171904731, 171904523".
biodb.TRACE[2024-08-10 16:03:24.846][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:24.847][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:24.848][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:24.849][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:24.849][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:24.850][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:24.851][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-08-10 16:03:24.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML".
biodb.DEBUG[2024-08-10 16:03:24.854][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:24.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:24.856][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML".
biodb.TRACE[2024-08-10 16:03:24.983][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171904731,171904523/XML).
biodb.TRACE[2024-08-10 16:03:25.180][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904731.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171904523.xml"
biodb.DEBUG[2024-08-10 16:03:25.182][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:25.183][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:25.184][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:25.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.201][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.203][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.208][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.215][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.220][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.225][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.226][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.240][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:25.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:25.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.247][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.247][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.259][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.260][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.265][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:25.266][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:25.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.269][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:25.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:25.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.275][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.276][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.281][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.285][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:25.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:25.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:25.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.314][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:25.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.323][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:25.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.332][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.370][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.371][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.377][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.378][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.379][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.383][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.384][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.385][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.389][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.391][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.397][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.401][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:25.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:25.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:25.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.409][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:25.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:25.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.419][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:25.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.425][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:25.426][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:25.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:25.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:25.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.431][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:25.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:25.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:25.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.437][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.438][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.443][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.444][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:25.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:25.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:25.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:25.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.490][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:25.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:25.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:25.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:25.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:25.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:25.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:25.541][self$createEntryFromContent] Accession numbers: 171904731, 171904523.
biodb.DEBUG[2024-08-10 16:03:25.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:25.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.557][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.558][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.561][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.568][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.571][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-08-10 16:03:25.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.597][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.598][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.599][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.607][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.611][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-08-10 16:03:25.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.637][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.637][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.647][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.650][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.651][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:25.661][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:25.662][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:25.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.691][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:25.694][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:25.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:25.695][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:25.696][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:25.698][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:25.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.713][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.714][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.719][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.722][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.723][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.727][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:25.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.759][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.760][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.760][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.768][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.769][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.773][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.783][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-08-10 16:03:25.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.799][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.800][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.801][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.808][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.809][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.813][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.824][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853737].
biodb.DEBUG[2024-08-10 16:03:25.824][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:25.825][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:25.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:25.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:25.843][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:25.844][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-08-10 16:03:25.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:25.846][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-08-10 16:03:25.848][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:25.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.865][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.866][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.867][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.868][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.876][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.877][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.880][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.881][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:25.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.907][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.908][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:25.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:25.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:25.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:25.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:25.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.949][private$selectFields]
biodb.TRACE[2024-08-10 16:03:25.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:25.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:25.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.954][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.957][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.959][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:25.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:25.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:25.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-08-10 16:03:25.974][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:25.975][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:25.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:25.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:25.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:26.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:26.009][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:26.010][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:26.011][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:26.086][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:26.087][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:26.088][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:26.089][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:26.202][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:26.204][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-08-10 16:03:26.206][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-08-10 16:03:26.208][private$loadEntries] Creating entries from ids [2]: "171873472, 171873471".
biodb.DEBUG[2024-08-10 16:03:26.209][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:26.210][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171873472, 171873471".
biodb.TRACE[2024-08-10 16:03:26.211][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:26.218][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:26.219][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:26.220][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:26.221][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:26.222][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:26.223][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-08-10 16:03:26.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472,171873471/XML".
biodb.DEBUG[2024-08-10 16:03:26.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:26.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:26.228][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472,171873471/XML".
biodb.TRACE[2024-08-10 16:03:26.344][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171873472,171873471/XML).
biodb.TRACE[2024-08-10 16:03:26.509][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171873472.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171873471.xml"
biodb.DEBUG[2024-08-10 16:03:26.511][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:26.512][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:26.513][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:26.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.531][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.532][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.537][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.538][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.544][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.545][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.551][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.557][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.558][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.563][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:26.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.565][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.566][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:26.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.571][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.588][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:26.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:26.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:26.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:26.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.594][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:26.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.600][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.601][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.606][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.607][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:26.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.639][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:26.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.691][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.697][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.698][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.699][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.704][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.710][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.711][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.716][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.717][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.722][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.723][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.724][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.728][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:26.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.730][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.734][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:26.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:26.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:26.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:26.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.747][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.749][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.761][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:26.762][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:26.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.768][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:26.769][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:26.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.774][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.775][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.776][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.781][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:26.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:26.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.804][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:26.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:26.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.813][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:26.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:26.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.822][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:26.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:26.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:26.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:26.872][self$createEntryFromContent] Accession numbers: 171873472, 171873471.
biodb.DEBUG[2024-08-10 16:03:26.873][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:26.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.889][private$selectFields]
biodb.TRACE[2024-08-10 16:03:26.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:26.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:26.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.899][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.902][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:26.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.912][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:26.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.928][private$selectFields]
biodb.TRACE[2024-08-10 16:03:26.929][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:26.929][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:26.930][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.936][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.937][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.938][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.939][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.941][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.951][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873472].
biodb.DEBUG[2024-08-10 16:03:26.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:26.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:26.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.967][private$selectFields]
biodb.TRACE[2024-08-10 16:03:26.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:26.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:26.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.976][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:26.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.979][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:26.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:26.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873471].
biodb.DEBUG[2024-08-10 16:03:26.990][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:26.991][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:26.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:26.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:26.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:26.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:26.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:26.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.005][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:27.012][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:27.013][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:27.015][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:27.091][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:27.092][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:27.093][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:27.094][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:27.225][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:27.226][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-08-10 16:03:27.229][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-08-10 16:03:27.231][private$loadEntries] Creating entries from ids [1]: "171898984".
biodb.DEBUG[2024-08-10 16:03:27.232][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:27.233][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171898984".
biodb.TRACE[2024-08-10 16:03:27.234][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-08-10 16:03:27.235][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:27.236][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:27.236][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:27.237][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:27.238][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:27.239][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-08-10 16:03:27.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171898984/XML".
biodb.DEBUG[2024-08-10 16:03:27.242][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:27.243][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:27.244][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171898984/XML".
biodb.TRACE[2024-08-10 16:03:27.353][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171898984/XML).
biodb.TRACE[2024-08-10 16:03:27.509][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171898984.xml"
biodb.DEBUG[2024-08-10 16:03:27.510][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:27.511][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:27.512][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:27.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.523][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.529][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.530][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.536][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.536][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.542][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.543][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.548][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.549][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.555][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.555][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.561][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:27.562][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:27.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:27.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.567][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:27.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:27.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.573][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.574][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:27.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:27.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.579][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.580][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:27.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.585][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:27.586][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:27.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.588][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:27.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.591][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:27.592][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:27.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:27.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.598][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:27.598][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:27.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:27.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:27.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:27.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:27.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.619][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:27.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:27.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.627][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:27.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.645][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:27.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:27.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:27.686][self$createEntryFromContent] Accession numbers: 171898984.
biodb.DEBUG[2024-08-10 16:03:27.687][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:27.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.703][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.713][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.716][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.716][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:27.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.743][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.751][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.756][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.759][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.760][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.764][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:27.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.775][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.790][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.790][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.791][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.795][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171898984].
biodb.DEBUG[2024-08-10 16:03:27.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:27.813][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:27.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:27.844][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-08-10 16:03:27.846][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.847][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-08-10 16:03:27.848][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:27.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.863][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.864][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.869][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.871][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.873][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.876][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904736].
biodb.DEBUG[2024-08-10 16:03:27.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.901][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.909][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.910][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.910][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.914][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904729].
biodb.DEBUG[2024-08-10 16:03:27.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:27.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.939][private$selectFields]
biodb.TRACE[2024-08-10 16:03:27.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:27.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:27.941][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.947][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.948][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:27.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.952][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:27.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:27.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:27.961][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:27.962][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:27.963][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:27.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.971][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:27.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:27.979][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:27.980][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-08-10 16:03:27.981][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:27.982][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-08-10 16:03:27.983][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:27.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:27.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:27.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:27.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:27.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:27.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:27.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.006][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.010][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.011][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.016][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.019][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-08-10 16:03:28.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.044][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.045][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.046][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.050][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.053][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.054][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.058][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-08-10 16:03:28.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.084][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.084][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.085][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.086][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.093][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.097][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.106][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:28.107][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.108][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:28.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:28.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.141][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:28.143][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.158][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.159][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.160][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.168][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.171][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:28.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.197][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.197][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.198][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.206][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.209][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.210][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171871699].
biodb.DEBUG[2024-08-10 16:03:28.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.235][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.238][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.241][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.244][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.254][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853737].
biodb.DEBUG[2024-08-10 16:03:28.264][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.265][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:28.281][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.282][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-08-10 16:03:28.283][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.284][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-08-10 16:03:28.286][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.301][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.302][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.309][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.311][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.312][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.314][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.324][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:28.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.340][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.349][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.352][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.353][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.362][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:28.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.378][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.379][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.387][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.390][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.391][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.400][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171877309].
biodb.DEBUG[2024-08-10 16:03:28.401][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.402][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.418][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:28.432][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-08-10 16:03:28.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.435][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-08-10 16:03:28.436][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.452][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.464][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:28.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.489][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.494][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.495][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.497][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.498][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.499][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.499][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.500][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.508][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873472].
biodb.DEBUG[2024-08-10 16:03:28.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.534][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.535][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.544][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.547][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171873471].
biodb.DEBUG[2024-08-10 16:03:28.558][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.558][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:28.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.572][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:28.575][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:28.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-08-10 16:03:28.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:28.577][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-08-10 16:03:28.579][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.594][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.603][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.606][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.607][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:28.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.633][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.638][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.639][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.640][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.642][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.646][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:28.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.671][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.671][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.676][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.679][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.680][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.682][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.683][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.684][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171898984].
biodb.DEBUG[2024-08-10 16:03:28.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:28.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:28.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:28.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:28.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:28.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:28.749][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:28.750][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:28.752][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:28.827][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:28.828][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:28.829][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:28.830][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:28.927][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:28.936][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-08-10 16:03:28.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-08-10 16:03:28.941][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:28.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.957][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.957][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.962][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.965][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.967][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:28.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904736].
biodb.DEBUG[2024-08-10 16:03:28.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:28.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:28.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:28.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:28.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:28.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:28.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:28.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:28.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:28.995][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.996][private$selectFields]
biodb.TRACE[2024-08-10 16:03:28.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:28.997][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:28.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:28.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:28.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.002][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.004][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.005][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.008][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904729].
biodb.DEBUG[2024-08-10 16:03:29.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.033][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.034][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.035][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.036][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.039][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.042][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.043][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.047][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:29.057][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:29.058][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:29.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.072][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:29.074][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:29.075][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:29.076][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:29.152][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:29.153][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:29.154][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:29.155][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:29.258][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:29.259][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-08-10 16:03:29.263][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-08-10 16:03:29.264][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:29.266][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.279][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.280][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.281][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.285][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.289][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.292][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.292][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-08-10 16:03:29.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.317][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.319][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.326][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.326][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.330][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:29.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.355][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.355][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.357][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.370][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.370][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.371][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.375][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.384][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:29.385][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:29.386][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:29.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:29.417][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:29.418][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:29.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:29.420][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:29.421][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:29.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.436][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.449][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:29.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.474][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.483][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.486][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-08-10 16:03:29.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.511][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.520][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.524][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.533][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-08-10 16:03:29.534][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:29.534][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:29.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.536][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.548][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:29.551][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:29.552][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-08-10 16:03:29.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:29.553][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-08-10 16:03:29.555][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:29.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.570][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.577][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.579][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.579][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.583][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.589][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:29.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.600][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.608][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.609][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.624][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.624][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.625][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.627][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.637][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:29.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:29.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.653][private$selectFields]
biodb.TRACE[2024-08-10 16:03:29.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:29.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:29.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.661][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.662][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:29.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.666][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:29.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:29.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:29.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:29.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900684].
biodb.DEBUG[2024-08-10 16:03:29.676][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:29.676][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:29.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:29.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:29.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:29.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:29.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:29.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:29.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:29.705][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:29.707][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:29.708][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:29.709][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:29.786][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:29.787][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:29.788][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:29.789][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:29.884][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:29.886][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-08-10 16:03:29.889][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-08-10 16:03:29.891][private$loadEntries] Creating entries from ids [2]: "171854777, 171852974".
biodb.DEBUG[2024-08-10 16:03:29.891][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-08-10 16:03:29.893][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171854777, 171852974".
biodb.TRACE[2024-08-10 16:03:29.894][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-08-10 16:03:29.894][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-08-10 16:03:29.895][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:29.896][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:29.897][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-08-10 16:03:29.897][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-08-10 16:03:29.898][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-08-10 16:03:29.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML".
biodb.DEBUG[2024-08-10 16:03:29.901][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:29.902][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:29.903][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML".
biodb.TRACE[2024-08-10 16:03:30.029][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171854777,171852974/XML).
biodb.TRACE[2024-08-10 16:03:30.265][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171854777.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171852974.xml"
biodb.DEBUG[2024-08-10 16:03:30.267][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-08-10 16:03:30.268][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-08-10 16:03:30.269][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-08-10 16:03:30.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.282][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.286][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.287][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.293][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.293][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.299][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.300][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.305][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.306][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.311][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.312][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.318][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:30.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.324][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.336][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.337][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.338][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.342][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:30.343][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:30.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.345][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:30.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:30.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.348][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:30.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:30.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.354][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.355][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.360][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.361][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.363][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:30.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.410][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:30.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.455][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.459][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.460][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.465][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.466][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.471][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.477][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.478][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.483][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.484][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.486][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.490][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:30.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.492][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-08-10 16:03:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:30.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:30.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.514][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:30.514][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:30.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:30.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:30.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.520][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:30.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-08-10 16:03:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.526][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.527][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.532][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.533][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-08-10 16:03:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-08-10 16:03:30.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-08-10 16:03:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:30.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.564][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-08-10 16:03:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:30.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-08-10 16:03:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:30.622][self$createEntryFromContent] Accession numbers: 171854777, 171852974.
biodb.DEBUG[2024-08-10 16:03:30.623][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:30.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.639][private$selectFields]
biodb.TRACE[2024-08-10 16:03:30.640][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:30.641][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:30.642][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.649][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.658][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.659][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:30.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.669][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171854777].
biodb.DEBUG[2024-08-10 16:03:30.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.684][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.685][private$selectFields]
biodb.TRACE[2024-08-10 16:03:30.686][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:30.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:30.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.690][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.691][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.693][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.693][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.694][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.695][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.696][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.697][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.698][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:30.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:30.708][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.709][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.714][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.724][private$selectFields]
biodb.TRACE[2024-08-10 16:03:30.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:30.725][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:30.726][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.733][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.736][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.737][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171852974].
biodb.DEBUG[2024-08-10 16:03:30.747][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:30.748][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:30.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:30.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:30.764][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-08-10 16:03:30.765][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-08-10 16:03:30.767][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-08-10 16:03:30.842][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-08-10 16:03:30.843][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-08-10 16:03:30.844][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-08-10 16:03:30.845][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-08-10 16:03:30.946][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-08-10 16:03:30.948][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-08-10 16:03:30.951][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-08-10 16:03:30.953][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:30.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:30.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:30.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:30.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:30.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.970][private$selectFields]
biodb.TRACE[2024-08-10 16:03:30.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:30.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:30.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.979][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:30.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.983][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:30.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:30.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:30.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:30.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-08-10 16:03:30.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:30.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:30.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:30.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.008][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.009][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.014][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.016][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.017][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.018][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.022][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.032][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:31.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.047][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.047][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.052][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.053][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.054][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.055][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.056][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.057][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.057][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:31.071][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.072][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.101][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.115][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.117][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.118][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-08-10 16:03:31.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.120][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-08-10 16:03:31.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.138][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.147][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.151][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.161][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904736].
biodb.DEBUG[2024-08-10 16:03:31.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.167][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.176][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.177][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.179][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.182][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.183][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.184][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.186][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.189][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904729].
biodb.DEBUG[2024-08-10 16:03:31.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.215][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.216][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.217][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.221][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.224][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.228][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904710].
biodb.DEBUG[2024-08-10 16:03:31.238][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.239][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.253][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.255][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.256][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-08-10 16:03:31.257][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.258][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-08-10 16:03:31.259][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.275][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.276][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.278][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.283][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.284][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.288][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904523].
biodb.DEBUG[2024-08-10 16:03:31.298][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.313][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.314][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.315][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.318][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.319][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.320][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.321][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.323][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.326][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:31.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.357][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.367][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.368][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.382][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:31.383][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.413][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.415][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:31.417][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.418][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:31.419][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.436][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.443][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.445][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.446][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.449][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.450][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:31.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.475][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.480][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.483][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.485][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.488][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171846466].
biodb.DEBUG[2024-08-10 16:03:31.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.514][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.516][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.523][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.526][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171834268].
biodb.DEBUG[2024-08-10 16:03:31.536][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.537][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.552][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.554][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-08-10 16:03:31.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.557][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-08-10 16:03:31.559][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.574][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.575][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.576][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.581][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.584][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.587][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.597][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900686].
biodb.DEBUG[2024-08-10 16:03:31.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.613][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.629][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.632][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900685].
biodb.DEBUG[2024-08-10 16:03:31.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.658][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.659][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.663][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.666][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.668][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.671][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171900684].
biodb.DEBUG[2024-08-10 16:03:31.682][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.682][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.715][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.716][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-08-10 16:03:31.717][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-08-10 16:03:31.719][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.735][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.736][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.744][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.748][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171854777].
biodb.DEBUG[2024-08-10 16:03:31.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.765][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.773][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.773][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.775][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.783][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.786][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.796][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171853852].
biodb.DEBUG[2024-08-10 16:03:31.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.812][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.812][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.814][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.817][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.819][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.821][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.822][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.825][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.826][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.836][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171852974].
biodb.DEBUG[2024-08-10 16:03:31.837][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.837][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:31.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.845][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:31.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:31.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:31.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-08-10 16:03:31.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:31.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-08-10 16:03:31.859][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:31.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.876][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.892][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.896][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171904731].
biodb.DEBUG[2024-08-10 16:03:31.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.923][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.926][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.929][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.932][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.936][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901106].
biodb.DEBUG[2024-08-10 16:03:31.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:31.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:31.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:31.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:31.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:31.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:31.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.962][private$selectFields]
biodb.TRACE[2024-08-10 16:03:31.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:31.963][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:31.964][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.971][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.971][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-08-10 16:03:31.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.975][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-08-10 16:03:31.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:31.985][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171901072].
biodb.DEBUG[2024-08-10 16:03:31.986][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:31.986][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:32.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.006][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:32.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:32.012][biodb::testThat]
biodb.INFO [2024-08-10 16:03:32.012][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-08-10 16:03:32.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:32.014][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:32.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-08-10 16:03:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-08-10 16:03:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.043][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:32.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:32.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:32.064][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:32.065][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:32.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:32.066][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:32.068][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:32.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.182][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.182][private$selectFields]
biodb.TRACE[2024-08-10 16:03:32.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:32.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:32.185][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.185][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.188][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.189][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.190][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.191][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.192][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.193][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.194][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.195][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.197][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.198][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.200][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.201][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.203][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.204][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.207][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.212][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.215][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.220][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.221][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.223][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.224][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.225][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.226][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.229][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.231][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.232][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.235][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.236][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.237][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.238][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.239][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.240][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.241][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.242][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.243][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.244][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.245][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.246][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.247][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.248][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.248][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.250][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.251][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.253][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.257][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.259][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.260][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.261][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.262][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.263][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.264][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.265][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.268][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.271][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.274][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.275][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.275][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.277][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.277][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.278][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.280][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.280][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.281][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.282][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.283][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.285][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.286][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.288][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.289][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.291][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.292][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.294][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.295][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.309][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.309][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.323][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.324][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.326][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.327][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.329][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.330][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:32.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.426][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171904710, [hydroxymethyl-[2-(2-thienyl)ethyl]phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphino]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, ...].
biodb.DEBUG[2024-08-10 16:03:32.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.594][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.594][private$selectFields]
biodb.TRACE[2024-08-10 16:03:32.595][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:32.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:32.597][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.597][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.600][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.600][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.601][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.603][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.604][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.606][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.607][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.609][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.610][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.612][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.613][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.615][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.623][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.624][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.626][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.629][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.638][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.644][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.647][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.647][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.654][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.655][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.656][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.657][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.660][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.661][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.664][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.666][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.667][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.668][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.669][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.670][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.671][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.675][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.675][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.677][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.678][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.678][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.681][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.681][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.683][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.686][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.687][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.692][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.693][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.696][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.696][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.699][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.699][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:32.700][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.702][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.703][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.704][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.705][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.706][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.707][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.709][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.709][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.712][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.715][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.715][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.718][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.727][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.733][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.733][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.735][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.736][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.741][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.741][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.742][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.744][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.745][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.748][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.831][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.834][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.860][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171871699, 1-(2-aminothiazol-5-yl)butane-1,2,4-triol, 1-(2-amino-5-thiazolyl)butane-1,2,4-triol, 1-(2-amino-1,3-thiazol-5-yl)butane-1,2,4-triol, 1-(2-azanyl-1,3-thiazol-5-yl)butane-1,2,4-triol, ...].
biodb.DEBUG[2024-08-10 16:03:32.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:32.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:32.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:32.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:32.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:32.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:32.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:32.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:32.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:32.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:32.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:32.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:32.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:32.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:32.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:32.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.965][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.968][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:32.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:32.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:32.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.006][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.007][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.009][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.010][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.012][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.013][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.015][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.016][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.018][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.019][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.022][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.024][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.024][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.032][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.034][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.035][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.036][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.038][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.044][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.048][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.049][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.050][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.052][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.053][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.055][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.058][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.058][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.060][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.061][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.063][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.064][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.066][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.067][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.069][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.070][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.072][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.073][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.075][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.080][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.081][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.083][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.084][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.086][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.087][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.089][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.094][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.095][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.098][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.100][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.101][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.101][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.104][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.105][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.107][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.108][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.110][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.110][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.112][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.113][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.115][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.118][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.119][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.121][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.124][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.126][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.127][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.129][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.130][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.132][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.133][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.134][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.135][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.136][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.142][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.147][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.148][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.150][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.151][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.152][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.153][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.225][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.240][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853737, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, N-(3-oxetanylmethyl)-2-pyrrolo[2,1-f][1,2,4]triazinamine, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, ...].
biodb.DEBUG[2024-08-10 16:03:33.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:33.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:33.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:33.320][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:33.323][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:33.324][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-08-10 16:03:33.325][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:33.326][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-08-10 16:03:33.328][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:33.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.437][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.438][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.440][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.440][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.443][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.443][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.444][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.446][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.446][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.447][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.449][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.450][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.452][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.453][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.455][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.455][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.457][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.457][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.458][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.460][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.463][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.463][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.464][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.466][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.469][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.470][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.472][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.474][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.480][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.481][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.483][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.484][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.486][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.489][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.489][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.491][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.492][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.494][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.495][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.497][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.498][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.499][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.500][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.502][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.503][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.505][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.506][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.508][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.509][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.511][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.512][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.514][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.519][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.524][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.525][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.525][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.527][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.527][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.528][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.530][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.531][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.532][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.535][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.537][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.538][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.541][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.543][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.543][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.545][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.546][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.548][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.549][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.555][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.556][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.557][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.557][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.559][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.560][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.565][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.570][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.571][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.573][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.574][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.576][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:33.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.663][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901106, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 4-(2-methyl-5-nitro-1H-imidazol-4-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:33.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:33.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:33.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:33.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:33.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:33.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:33.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:33.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.827][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.828][private$selectFields]
biodb.TRACE[2024-08-10 16:03:33.828][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:33.829][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:33.830][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.830][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.832][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.833][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.834][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.836][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.837][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.838][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.839][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.840][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.842][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.842][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.845][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.845][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.854][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.856][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.857][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.859][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.868][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.871][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.874][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.876][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.877][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.878][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.880][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.883][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.889][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.891][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.892][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.895][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.895][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.897][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.897][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.898][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.900][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.900][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.901][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.903][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.903][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.906][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.907][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.909][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.910][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.917][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.918][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.922][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.923][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.924][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.926][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.927][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.929][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.930][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:33.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.931][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.932][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.933][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.934][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.938][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.939][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.942][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.942][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:33.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.944][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.945][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:33.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:33.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:33.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:33.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:33.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:33.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.956][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:33.956][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:33.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:33.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:33.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:33.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:33.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:33.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.969][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.970][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.970][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:33.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.972][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.973][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:33.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.975][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:33.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.034][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.057][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.127][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901072, 4-(5-fluoro-2-methoxy-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(5-fluoro-2-methoxy-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(5-fluoro-2-methoxypyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(5-fluoranyl-2-methoxy-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:34.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.229][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.229][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.231][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.232][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.234][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.237][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.238][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.239][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.240][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.241][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.241][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.243][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.244][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.246][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.247][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.248][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.249][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.250][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.250][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.252][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.252][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.255][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.255][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.256][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.257][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.258][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.259][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.260][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.261][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.263][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.264][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.267][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.270][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.272][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.273][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.275][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.276][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.278][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.281][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.282][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.285][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.288][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.288][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.290][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.291][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.293][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.294][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.296][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.296][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.297][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.302][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.303][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.305][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.306][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.307][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.308][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.310][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.313][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.320][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.320][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.323][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.323][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.326][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.326][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.327][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.328][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.330][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.330][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.331][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.332][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.333][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.334][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.335][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.336][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.337][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.338][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.339][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.340][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.341][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.342][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.343][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.345][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.357][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.360][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.361][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.361][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.363][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.367][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.369][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.374][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.375][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.376][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.378][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.379][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.380][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.381][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.441][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.458][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.467][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171877309, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxy-butanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-azanyl-4-cyano-1H-pyrazol-5-yl)-3,4-bis(oxidanyl)butanoic acid, ...].
biodb.DEBUG[2024-08-10 16:03:34.531][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:34.531][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:34.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:34.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:34.553][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:34.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-08-10 16:03:34.554][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:34.555][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-08-10 16:03:34.557][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:34.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.627][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.630][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.668][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.671][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.674][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.675][private$selectFields]
biodb.TRACE[2024-08-10 16:03:34.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:34.676][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:34.677][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.678][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.678][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.680][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.681][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.681][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.683][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.683][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.684][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.686][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.686][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.687][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.689][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.690][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.692][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.693][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.695][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.696][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.697][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.700][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.704][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.705][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.707][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.709][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.712][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.718][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.719][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.721][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.722][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.724][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.725][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.730][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.731][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.733][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.734][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.735][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.736][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.737][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.738][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.739][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.740][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.741][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.742][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.744][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.745][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.747][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.750][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.753][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.753][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.754][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.755][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.756][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.758][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.759][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.760][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.761][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.762][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.764][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.767][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.768][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.769][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.770][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.771][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.771][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.773][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.773][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.774][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:34.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.776][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.777][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:34.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.780][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.780][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.781][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.783][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.783][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.785][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.786][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.787][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.788][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.789][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.790][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.791][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.792][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.792][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.794][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.797][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.797][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.799][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.800][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.801][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.802][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.803][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.804][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.805][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.806][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.808][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.811][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.811][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.813][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.814][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.815][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.816][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.817][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.818][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.819][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.820][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.822][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.822][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:34.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:34.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:34.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:34.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:34.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:34.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:34.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.913][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:34.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:34.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:34.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:34.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:34.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171904710, [hydroxymethyl-[2-(2-thienyl)ethyl]phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphino]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, [hydroxymethyl(2-thiophen-2-ylethyl)phosphanyl]methanol, ...].
biodb.DEBUG[2024-08-10 16:03:34.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:34.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:34.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:34.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:34.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:34.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:34.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:34.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:34.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:34.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:34.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.039][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.089][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.090][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.092][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.093][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.093][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.095][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.095][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.096][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.098][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.098][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.099][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.101][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.102][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.104][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.105][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.107][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.108][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.109][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.110][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.112][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.113][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.114][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.115][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.116][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.119][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.119][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.121][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.122][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.124][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.124][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.127][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.127][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.130][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.130][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.131][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.132][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.133][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.134][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.135][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.136][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.137][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.138][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.139][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.140][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.141][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.142][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.143][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.144][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.145][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.146][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.147][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.148][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.149][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.150][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.151][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.152][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.153][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.154][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.155][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.156][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.157][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.157][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.160][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.163][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.166][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.169][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.169][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.172][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.177][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.178][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.184][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.185][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.187][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.187][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.190][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.190][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.192][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.193][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.194][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.195][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.196][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.197][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.199][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.199][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.205][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.206][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.208][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.209][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.211][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.217][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.217][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.219][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.219][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.222][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.222][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.223][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.225][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.228][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.228][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.234][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.235][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.237][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.238][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.240][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.332][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.394][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171871699, 1-(2-aminothiazol-5-yl)butane-1,2,4-triol, 1-(2-amino-5-thiazolyl)butane-1,2,4-triol, 1-(2-amino-1,3-thiazol-5-yl)butane-1,2,4-triol, 1-(2-azanyl-1,3-thiazol-5-yl)butane-1,2,4-triol, ...].
biodb.DEBUG[2024-08-10 16:03:35.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.499][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.502][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.502][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.503][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.504][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.504][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.508][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.509][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.512][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.515][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.517][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.520][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.522][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.530][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.531][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.532][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.533][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.540][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.546][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.546][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.548][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.549][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.552][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.552][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.557][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.558][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.559][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.560][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.561][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.568][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.569][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.570][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.573][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.574][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.579][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.581][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.581][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.584][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.585][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.587][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.590][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.592][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.593][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.594][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.595][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.596][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.597][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.598][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.602][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.602][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.604][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.605][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.607][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.608][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.609][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.610][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.611][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.612][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.614][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.614][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.615][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.617][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.617][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.618][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.620][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.620][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.621][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.626][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.627][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.629][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.631][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.634][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.637][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.637][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.646][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.651][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.652][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.653][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.654][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.655][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.656][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.657][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.711][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.740][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853737, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, N-(3-oxetanylmethyl)-2-pyrrolo[2,1-f][1,2,4]triazinamine, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, N-(oxetan-3-ylmethyl)pyrrolo[2,1-f][1,2,4]triazin-2-amine, ...].
biodb.DEBUG[2024-08-10 16:03:35.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:35.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:35.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:35.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:35.829][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:35.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-08-10 16:03:35.831][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:35.832][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-08-10 16:03:35.833][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:35.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:35.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:35.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:35.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:35.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:35.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:35.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.896][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.941][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.944][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.944][private$selectFields]
biodb.TRACE[2024-08-10 16:03:35.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:35.946][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:35.947][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:35.947][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.950][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.951][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:35.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.953][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.954][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:35.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.956][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.957][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:35.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.959][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.960][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:35.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:35.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.965][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:35.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:35.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:35.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:35.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.973][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.974][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:35.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:35.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.976][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.977][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.978][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:35.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.979][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:35.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.982][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.983][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:35.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:35.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:35.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.989][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.990][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:35.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.992][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.992][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:35.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.994][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.995][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.995][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:35.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:35.997][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:35.997][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:35.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:35.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.000][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.001][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.001][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.003][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.004][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.004][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.007][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.008][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.010][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.010][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.017][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.020][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.023][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.027][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.028][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.030][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.033][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.034][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.036][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.041][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.042][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.044][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.045][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.047][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.048][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.050][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.051][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.059][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.060][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.061][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.064][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.064][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.066][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.066][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.069][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.070][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.070][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.072][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.072][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.075][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.078][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.081][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.082][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.084][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.085][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.087][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.088][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.090][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.098][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.099][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.100][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.101][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.102][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.103][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.104][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.105][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.161][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.164][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901106, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 3,4-dihydroxy-4-(2-methyl-5-nitro-1H-imidazol-4-yl)butanenitrile, 4-(2-methyl-5-nitro-1H-imidazol-4-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:36.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.358][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.399][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.401][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.402][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.404][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.405][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.408][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.408][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.410][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.411][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.413][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.414][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.415][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.416][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.417][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.418][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.419][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.420][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.422][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.422][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.425][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.429][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.430][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.433][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.433][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.435][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.436][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.437][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.438][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.439][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.441][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.442][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.444][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.445][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.445][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.447][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.447][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.448][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.450][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.450][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.451][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.453][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.456][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.457][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.458][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.459][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.461][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.462][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.463][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.464][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.465][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.466][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.467][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.468][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.469][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.471][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.471][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.474][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.477][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.480][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.481][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.482][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.483][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.484][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.485][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.486][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.488][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.491][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.495][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.496][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.499][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.502][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.505][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.506][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.507][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.510][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.510][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.513][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.513][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.515][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.516][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.517][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.518][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.519][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.520][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.521][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.522][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.524][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.532][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.533][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.535][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.538][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.538][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.539][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.541][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.542][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.542][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.548][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.549][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.552][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.552][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.555][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.647][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.650][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.716][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171901072, 4-(5-fluoro-2-methoxy-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(5-fluoro-2-methoxy-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(5-fluoro-2-methoxypyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(5-fluoranyl-2-methoxy-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:36.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:36.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:36.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:36.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:36.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:36.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:36.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.777][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.823][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.824][private$selectFields]
biodb.TRACE[2024-08-10 16:03:36.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:36.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:36.832][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.833][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.836][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.836][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.837][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.839][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.839][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.840][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.841][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.842][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.843][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.844][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.847][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.848][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.849][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.850][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.851][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.853][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.854][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.856][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.859][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.860][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.862][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.863][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.868][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.868][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.870][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.873][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.873][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.874][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.876][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.877][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.878][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.879][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.880][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.881][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.882][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.883][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.884][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.885][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.885][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.887][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.888][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.888][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.890][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.891][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.893][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.893][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.896][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.897][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.898][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.901][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.906][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.907][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.908][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.910][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.911][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.916][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.917][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.918][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.922][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.923][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.925][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.926][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.928][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.929][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:36.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.930][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.931][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.932][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:36.932][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.933][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.935][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.936][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.938][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.939][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.941][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.944][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.944][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:36.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.946][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.947][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.947][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:36.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.949][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.949][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:36.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:36.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.951][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.952][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:36.953][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:36.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.954][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:36.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.957][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.958][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:36.959][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:36.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.960][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:36.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.963][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.964][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:36.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.966][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:36.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:36.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.968][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:36.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.971][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.972][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.973][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.974][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.976][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:36.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.977][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.978][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:36.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:36.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:36.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:36.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.061][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.132][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171877309, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxy-butanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-amino-4-cyano-1H-pyrazol-5-yl)-3,4-dihydroxybutanoic acid, 4-(3-azanyl-4-cyano-1H-pyrazol-5-yl)-3,4-bis(oxidanyl)butanoic acid, ...].
biodb.DEBUG[2024-08-10 16:03:37.133][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:37.134][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:37.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:37.175][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:37.177][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:37.178][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:37.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:37.180][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:37.182][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:37.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:37.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.241][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.275][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.280][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.281][private$selectFields]
biodb.TRACE[2024-08-10 16:03:37.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:37.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:37.283][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.284][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.286][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.286][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.287][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.288][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.289][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.290][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.291][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.292][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.293][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.294][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.295][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.295][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.297][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.299][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.306][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.312][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.315][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.316][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.317][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.320][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.321][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.323][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.323][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.326][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.329][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.330][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.331][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.333][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.334][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.335][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.337][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.338][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.340][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.340][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.342][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.343][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.344][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.345][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.346][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.347][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.348][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.349][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.349][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.351][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.354][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.356][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.359][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.360][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.361][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.362][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.365][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.366][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.368][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.371][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.373][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.374][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.375][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.376][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.379][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.380][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.380][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.381][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.382][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.383][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.384][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.385][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.386][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.387][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.387][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.390][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.390][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.392][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.393][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.393][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.395][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.396][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.398][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.398][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.399][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.400][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.403][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.406][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.407][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.407][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.409][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.409][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.411][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.412][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.413][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.414][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.415][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.416][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.417][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.420][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.420][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.421][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.423][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.423][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.424][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.425][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.426][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:37.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.504][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.509][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.576][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853852, 3,3-dimethyl-6-phenyl-tetrahydropyran-2-one, 3,3-dimethyl-6-phenyl-2-oxanone, 3,3-dimethyl-6-phenyloxan-2-one, 3,3-dimethyl-6-phenyl-oxan-2-one, ...].
biodb.DEBUG[2024-08-10 16:03:37.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.638][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.641][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.678][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.679][private$selectFields]
biodb.TRACE[2024-08-10 16:03:37.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:37.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:37.681][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.682][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.684][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.684][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.685][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.687][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.687][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.688][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.689][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.690][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.691][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.692][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.693][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.694][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.695][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.696][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.696][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.698][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.699][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.701][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.701][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.702][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.707][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.709][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.712][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.715][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.718][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.722][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.725][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.727][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.729][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.730][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.730][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.732][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.732][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.733][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.734][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.735][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.736][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.737][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.738][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.739][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.740][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.741][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.742][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.744][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.746][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.746][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.748][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.750][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.752][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.753][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.755][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.757][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.758][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.760][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.760][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.762][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.764][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.765][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.766][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.767][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.768][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.769][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.769][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.771][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.771][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.772][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:37.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.776][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.776][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.778][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.779][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.787][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.788][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.790][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.791][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.793][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.793][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.796][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.799][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.804][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.805][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.807][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.808][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.809][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.819][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.819][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.821][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.822][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.823][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.824][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:37.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.908][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:37.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:37.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.960][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:37.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.968][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171846466, 1-methyl-3-(p-tolyl)hexahydropyrimidin-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, ...].
biodb.DEBUG[2024-08-10 16:03:37.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:37.970][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:37.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:37.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:37.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:37.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:37.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:37.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:37.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:37.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:37.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.019][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.039][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.042][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.077][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.078][private$selectFields]
biodb.TRACE[2024-08-10 16:03:38.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:38.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:38.080][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.081][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.083][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.084][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.084][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.086][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.087][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.089][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.089][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.090][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.092][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.092][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.094][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.095][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.097][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.098][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.099][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.100][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.101][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.101][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.103][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.104][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.106][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.106][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.107][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.108][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.109][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.111][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.114][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.115][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.117][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.120][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.122][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.125][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.126][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.127][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.129][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.130][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.132][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.132][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.134][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.134][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.135][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.137][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.138][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.139][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.140][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.141][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.143][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.143][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.146][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.150][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.152][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.153][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.155][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.155][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.158][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.160][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.163][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.164][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.166][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.166][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.168][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.169][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.171][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.172][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.173][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.175][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.175][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.176][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.183][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.184][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.186][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.186][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.187][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.188][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.191][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.192][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.194][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.197][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.197][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.198][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.200][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.202][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.205][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.208][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.211][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.212][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.213][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.214][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.215][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.215][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.217][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.217][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.306][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171834268, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2024-08-10 16:03:38.371][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:38.372][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:38.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.375][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:38.386][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:38.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:38.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-08-10 16:03:38.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:38.391][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-08-10 16:03:38.392][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:38.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.494][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.495][private$selectFields]
biodb.TRACE[2024-08-10 16:03:38.496][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:38.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:38.497][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.498][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.506][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.507][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.508][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.510][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.511][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.511][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.513][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.513][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.514][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.516][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.516][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.517][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.519][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.520][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.522][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.522][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.525][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.528][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.531][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.532][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.532][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.534][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.535][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.537][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.540][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.540][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.543][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.543][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.545][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.546][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.547][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.548][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.549][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.550][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.551][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.552][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.554][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.555][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.556][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.557][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.558][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.560][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.561][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.562][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.563][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.564][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.566][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.567][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.567][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.574][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.577][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.578][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.579][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.580][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.583][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.586][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.586][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.589][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.589][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.591][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.592][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.594][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.595][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.596][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.597][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.598][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.598][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.599][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.601][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.602][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.603][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.604][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.605][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.607][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.608][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.610][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.610][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.611][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.612][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.613][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.614][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.615][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.616][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.617][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.618][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.621][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.624][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.625][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.626][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.627][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.628][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.632][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.633][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.635][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.637][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.638][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.641][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.644][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.644][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.727][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.736][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.795][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900686, 4-(2-chloro-6-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-6-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-6-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-6-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:38.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:38.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:38.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:38.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:38.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:38.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:38.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:38.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.890][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.896][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.897][private$selectFields]
biodb.TRACE[2024-08-10 16:03:38.897][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:38.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:38.899][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.900][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.902][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.903][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.904][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.905][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.906][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.907][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.908][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.909][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.910][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.911][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.913][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.914][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.916][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.916][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.919][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.921][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.923][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.924][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.925][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.926][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.927][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.928][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.928][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.930][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.931][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.933][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.935][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.936][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.937][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.938][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.939][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.940][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.941][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.942][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.943][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.944][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.945][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:38.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.947][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.947][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.948][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:38.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.950][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.951][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:38.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.952][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.953][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.954][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:38.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.955][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.956][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.957][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:38.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.958][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:38.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.962][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:38.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:38.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:38.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:38.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.967][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:38.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.970][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:38.971][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:38.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.974][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:38.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.982][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.983][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:38.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.985][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.985][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:38.986][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:38.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.988][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:38.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.991][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.991][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.992][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:38.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.993][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:38.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:38.996][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:38.997][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.998][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:38.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:38.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.001][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.001][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.002][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.004][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.004][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.006][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.007][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.008][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.009][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.010][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.011][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.012][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.015][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.016][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.018][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.019][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.021][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.024][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.024][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.025][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.026][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.027][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.029][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.032][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.035][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.038][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.038][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.039][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.041][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.041][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.042][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.044][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:39.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.109][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.123][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.126][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.129][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900685, 4-(2-chloro-5-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-5-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-5-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-5-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:39.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.297][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.298][private$selectFields]
biodb.TRACE[2024-08-10 16:03:39.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:39.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:39.300][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.300][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.302][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.303][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.304][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.305][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.308][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.309][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.311][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.312][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.314][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.314][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.315][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.316][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.317][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.318][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.319][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.320][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.321][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.322][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.323][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.325][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.325][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.326][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.328][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.328][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.330][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.333][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.334][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.336][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.337][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.337][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.339][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.339][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.340][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.341][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.342][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.343][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.344][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.345][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.347][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.348][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.350][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.350][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.353][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.353][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.354][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.355][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.356][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.357][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.358][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.359][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.360][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.361][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.362][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.364][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.364][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.365][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.366][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.369][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.370][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.371][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.372][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.373][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.375][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.376][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.378][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.381][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.384][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.384][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.385][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.387][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.387][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.388][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.389][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.390][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.391][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.391][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.392][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.394][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.394][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.395][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.396][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.397][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.398][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.399][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.400][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.401][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.402][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.403][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.403][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.405][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.405][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.406][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.407][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.410][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.413][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.416][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.419][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.421][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.422][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.424][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.425][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.425][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.427][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.430][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.430][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.431][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.433][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.434][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.435][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.436][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:39.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.550][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900684, 4-(2-chloro-4-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-4-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-4-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-4-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:39.588][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:39.588][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:39.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:39.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:39.610][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:39.611][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-08-10 16:03:39.612][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:39.613][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-08-10 16:03:39.615][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:39.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:39.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:39.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:39.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:39.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:39.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:39.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.678][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.733][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.734][private$selectFields]
biodb.TRACE[2024-08-10 16:03:39.734][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:39.735][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:39.736][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.737][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.739][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.740][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.740][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.742][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.742][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.743][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.745][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.745][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.746][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.748][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.748][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.751][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.752][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.754][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.754][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.755][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.757][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.758][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.758][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.760][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.763][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.764][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.765][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.766][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.767][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.768][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.769][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.771][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.772][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.773][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.774][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.775][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.778][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.779][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.779][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.781][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.782][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.784][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.784][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.785][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.786][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.787][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.789][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.790][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.791][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.792][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.793][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.794][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.795][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.796][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.798][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.799][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.799][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.801][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.801][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.802][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.804][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.804][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.807][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.807][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.808][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.810][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.810][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.812][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.813][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.814][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.815][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.818][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.819][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.820][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.821][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.822][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.824][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.825][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.827][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.828][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.828][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.830][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.830][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.833][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.833][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.834][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:39.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.835][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.836][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.837][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:39.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.838][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.840][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.840][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.841][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.843][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.844][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.845][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.846][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.847][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.848][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.850][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.851][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.852][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.853][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.854][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.855][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.857][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.858][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.862][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.863][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.864][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.864][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.866][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.867][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.867][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.869][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.872][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.872][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.873][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.877][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.878][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.879][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:39.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.880][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.881][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.882][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:39.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.884][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:39.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:39.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:39.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.954][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:39.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:39.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:39.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:39.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:39.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.039][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171853852, 3,3-dimethyl-6-phenyl-tetrahydropyran-2-one, 3,3-dimethyl-6-phenyl-2-oxanone, 3,3-dimethyl-6-phenyloxan-2-one, 3,3-dimethyl-6-phenyl-oxan-2-one, ...].
biodb.DEBUG[2024-08-10 16:03:40.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.148][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.149][private$selectFields]
biodb.TRACE[2024-08-10 16:03:40.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:40.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:40.151][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.152][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.154][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.155][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.157][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.158][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.158][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.160][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.160][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.161][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.162][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.163][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.164][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.165][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.168][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.169][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.171][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.172][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.174][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.175][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.177][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.177][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.178][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.180][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.186][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.189][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.190][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.192][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.193][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.195][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.198][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.199][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.200][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.201][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.202][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.203][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.204][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.205][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.205][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.207][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.208][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.210][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.210][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.211][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.213][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.213][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.214][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.216][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.216][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.217][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.218][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.220][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.221][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.222][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.223][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.224][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.227][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.228][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.229][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.230][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.233][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.234][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.234][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.236][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.239][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.242][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.243][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.244][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.245][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.248][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.249][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.249][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.251][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.251][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.252][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.254][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.254][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.255][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.256][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.257][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.258][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.259][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.261][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.261][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.262][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.264][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.264][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.265][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.266][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.267][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.268][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.269][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.270][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.271][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.272][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.273][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.274][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.275][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.276][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.278][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.279][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.279][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.281][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.284][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.284][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.285][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.287][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.287][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.288][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.289][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.290][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.293][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.293][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.295][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.298][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.299][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.300][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.301][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.302][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.303][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.304][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.305][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.371][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.392][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171846466, 1-methyl-3-(p-tolyl)hexahydropyrimidin-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, 1-methyl-3-(4-methylphenyl)-1,3-diazinan-2-one, ...].
biodb.DEBUG[2024-08-10 16:03:40.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:40.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.525][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.570][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.571][private$selectFields]
biodb.TRACE[2024-08-10 16:03:40.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:40.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:40.573][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.576][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.577][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.577][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.579][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.579][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.580][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.582][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.582][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.583][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.584][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.585][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.586][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.587][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.588][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.589][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.590][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.591][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.593][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.596][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.599][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.599][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.600][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.602][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.602][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.603][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.605][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.608][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.608][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.611][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.613][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.614][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.615][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.616][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.617][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.619][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.620][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.621][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.622][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.625][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.625][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.626][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.628][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.628][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.629][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.630][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.631][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.632][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.633][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.634][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.636][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.637][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.638][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.639][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.640][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.642][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.643][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.645][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.646][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.648][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.648][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.649][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.651][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.651][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.654][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.657][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.657][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.659][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.662][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.663][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.664][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.665][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.671][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.672][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.674][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.675][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.676][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:40.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.678][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.678][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.679][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:40.680][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.682][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.683][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.684][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.685][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.686][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.686][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.688][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.689][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.691][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.692][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.692][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.694][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.695][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.695][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.697][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.698][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.700][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.702][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.703][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.703][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.704][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.706][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.706][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.707][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.708][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.709][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.711][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.714][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.717][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.720][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.721][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.721][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.723][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.724][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.726][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.727][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:40.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.809][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:40.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:40.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171834268, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]formamide, N-[2-(6-methyl-5,6-dihydro-1H-indol-3-yl)ethyl]methanamide, ...].
biodb.DEBUG[2024-08-10 16:03:40.878][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:40.879][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-08-10 16:03:40.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:40.894][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-08-10 16:03:40.896][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-08-10 16:03:40.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-08-10 16:03:40.898][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:40.899][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-08-10 16:03:40.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-08-10 16:03:40.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:40.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:40.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:40.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:40.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:40.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:40.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:40.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:40.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:40.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:40.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:40.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:40.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:40.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:40.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.975][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:40.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:40.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:40.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:40.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:40.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:40.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:40.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.019][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.020][private$selectFields]
biodb.TRACE[2024-08-10 16:03:41.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:41.021][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:41.022][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.023][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.024][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.025][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.028][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.028][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.031][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.032][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.034][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.035][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.037][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.038][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.040][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.043][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.046][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.049][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.049][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.050][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.051][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.052][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.053][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.054][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.057][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.058][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.060][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.063][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.063][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.064][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.065][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.067][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.068][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.069][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.070][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.071][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.072][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.073][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.074][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.075][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.075][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.077][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.078][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.080][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.080][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.081][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.082][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.083][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.084][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.085][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.087][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.088][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.089][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.091][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.093][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.096][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.099][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.102][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.105][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.105][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.106][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.107][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.110][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.111][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.112][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.113][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.114][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.114][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.116][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.116][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.117][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.118][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.119][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.120][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.121][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.121][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.123][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.123][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.124][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.126][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.126][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.127][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.128][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.129][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.130][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.131][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.132][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.133][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.134][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.135][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.135][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.137][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.138][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.140][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.142][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.145][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.146][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.147][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.148][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.149][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.150][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.151][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.159][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.160][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.161][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.163][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.166][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.167][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.167][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.169][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.170][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.171][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.172][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.173][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900686, 4-(2-chloro-6-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-6-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-6-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-6-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:41.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:41.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.434][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.435][private$selectFields]
biodb.TRACE[2024-08-10 16:03:41.435][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:41.436][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:41.437][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.437][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.439][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.440][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.441][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.442][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.445][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.446][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.446][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.448][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.449][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.451][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.454][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.454][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.456][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.457][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.458][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.459][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.462][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.463][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.464][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.465][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.466][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.468][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.470][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.471][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.473][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.476][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.477][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.477][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.479][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.479][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.480][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.481][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.482][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.483][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.484][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.485][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.486][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.487][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.488][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.489][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.490][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.491][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.491][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.493][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.493][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.494][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.496][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.496][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.497][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.498][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.499][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.500][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.501][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.504][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.505][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.507][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.509][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.510][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.512][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.515][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.518][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.518][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.519][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.521][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.523][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.524][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.525][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.526][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.527][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.528][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.529][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.530][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.530][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.532][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.532][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.533][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.536][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.537][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.537][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.539][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.539][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.540][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.542][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.542][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.543][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.544][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.545][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.546][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.547][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.548][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.549][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.550][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.551][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.551][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.553][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.555][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.558][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.559][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.560][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.561][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.562][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.564][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.567][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.567][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.569][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.572][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.573][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.574][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.575][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.576][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.576][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.578][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.579][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:41.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.642][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900685, 4-(2-chloro-5-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-5-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-5-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-5-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:41.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:41.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:41.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:41.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:41.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:41.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:41.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:41.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.784][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.837][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.838][private$selectFields]
biodb.TRACE[2024-08-10 16:03:41.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-08-10 16:03:41.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-08-10 16:03:41.840][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.843][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.844][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.845][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.846][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.847][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.848][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.849][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.850][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.850][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.852][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.852][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.853][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.855][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.855][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.856][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.858][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.861][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.862][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.864][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.864][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.867][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.867][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.868][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.875][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.876][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.879][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.882][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.883][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.885][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.886][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.888][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.888][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.889][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.890][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.891][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.892][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.894][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.894][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.895][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.896][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.897][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.898][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.899][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.900][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.901][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.902][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.904][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.905][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.908][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.909][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.910][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.911][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.912][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.913][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.914][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.915][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.917][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.918][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.920][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.921][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.921][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.923][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.923][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.924][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.925][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.926][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.928][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.931][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.932][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.934][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.937][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.937][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.938][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.940][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.941][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.941][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.943][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.943][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.944][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-08-10 16:03:41.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.945][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.946][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.947][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-08-10 16:03:41.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.950][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.951][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.952][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:41.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.953][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.954][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.954][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:41.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.956][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.956][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.957][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:41.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.959][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.959][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.960][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:41.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.961][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.962][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:41.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.964][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.965][ef$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:41.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.967][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:41.968][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:41.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.970][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.972][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.973][ef$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:41.974][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:41.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.975][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.976][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:41.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.978][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.979][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:41.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.981][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.981][ef$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:41.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.984][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:41.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.986][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.987][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.988][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:41.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.989][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.990][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.991][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:41.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.992][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.993][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-08-10 16:03:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:41.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:41.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-08-10 16:03:42.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-08-10 16:03:42.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-08-10 16:03:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-08-10 16:03:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-08-10 16:03:42.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-08-10 16:03:42.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-08-10 16:03:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-08-10 16:03:42.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-08-10 16:03:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-08-10 16:03:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-08-10 16:03:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-08-10 16:03:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-08-10 16:03:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-08-10 16:03:42.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-08-10 16:03:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-08-10 16:03:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-08-10 16:03:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-08-10 16:03:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171900684, 4-(2-chloro-4-methyl-3-pyridyl)-3,4-dihydroxy-butanenitrile, 4-(2-chloro-4-methyl-3-pyridinyl)-3,4-dihydroxybutanenitrile, 4-(2-chloro-4-methylpyridin-3-yl)-3,4-dihydroxybutanenitrile, 4-(2-chloranyl-4-methyl-pyridin-3-yl)-3,4-bis(oxidanyl)butanenitrile, ...].
biodb.DEBUG[2024-08-10 16:03:42.147][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-08-10 16:03:42.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-08-10 16:03:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.155][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-08-10 16:03:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:42.161][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:03:42.162][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-08-10 16:03:42.163][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-08-10 16:03:42.164][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:03:42.164][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.165][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.167][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-08-10 16:03:42.170][biodb::testContext]
biodb.INFO [2024-08-10 16:03:42.171][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:03:42.172][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-08-10 16:03:42.173][biodb::testContext] ********************************************************************************
biodb.INFO [2024-08-10 16:03:42.173][biodb::testContext]
biodb.INFO [2024-08-10 16:03:42.175][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:03:42.176][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-08-10 16:03:42.180][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:42.180][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-08-10 16:03:42.181][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.184][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-08-10 16:03:42.196][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.199][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-08-10 16:03:42.200][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.203][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-08-10 16:03:42.203][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-08-10 16:03:42.204][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-08-10 16:03:42.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.207][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-08-10 16:03:42.207][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-08-10 16:03:42.208][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.211][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-08-10 16:03:42.211][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-08-10 16:03:42.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.214][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-08-10 16:03:42.215][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-08-10 16:03:42.215][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-08-10 16:03:42.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.218][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-08-10 16:03:42.219][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.221][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-08-10 16:03:42.222][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-08-10 16:03:42.223][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-08-10 16:03:42.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.225][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:03:42.226][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-08-10 16:03:42.227][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-08-10 16:03:42.228][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-08-10 16:03:42.228][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-08-10 16:03:42.229][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-08-10 16:03:42.230][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.232][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-08-10 16:03:42.232][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-08-10 16:03:42.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.235][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-08-10 16:03:42.236][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-08-10 16:03:42.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.238][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-08-10 16:03:42.239][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-08-10 16:03:42.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.242][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-08-10 16:03:42.242][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-08-10 16:03:42.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.245][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-08-10 16:03:42.246][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-08-10 16:03:42.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.249][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-08-10 16:03:42.249][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-08-10 16:03:42.264][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-08-10 16:03:42.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.267][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-08-10 16:03:42.267][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-08-10 16:03:42.268][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-08-10 16:03:42.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.271][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-08-10 16:03:42.272][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.273][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-08-10 16:03:42.274][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.275][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.276][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.277][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.277][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.278][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:03:42.279][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.279][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.280][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-08-10 16:03:42.281][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.281][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.282][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.283][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:42.283][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:42.283][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:42.283][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:03:42.283][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:03:42.284][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:42.284][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.285][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.286][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.286][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.288][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.288][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.289][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.290][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.290][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.291][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.292][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-08-10 16:03:42.293][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.294][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:03:42.294][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.295][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.296][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.297][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.297][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.298][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.299][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:03:42.300][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.300][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.301][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-08-10 16:03:42.302][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.302][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.303][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.304][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:42.304][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:42.304][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:42.304][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-08-10 16:03:42.304][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-08-10 16:03:42.305][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:42.305][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.307][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.307][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.308][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.309][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.309][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.311][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.311][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.312][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.313][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-08-10 16:03:42.314][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.315][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-08-10 16:03:42.315][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.316][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.317][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.318][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.318][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.319][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.320][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-08-10 16:03:42.320][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.321][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.322][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-08-10 16:03:42.322][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.323][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.324][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.325][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:42.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.328][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.330][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.330][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.331][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.332][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.332][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.333][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.334][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-08-10 16:03:42.335][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.336][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-08-10 16:03:42.336][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.339][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.340][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.341][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-08-10 16:03:42.342][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.343][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.343][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-08-10 16:03:42.344][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.345][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.346][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-08-10 16:03:42.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.349][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.351][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.352][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.353][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.353][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.354][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.355][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.356][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:42.356][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.420][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-08-10 16:03:42.421][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-08-10 16:03:42.422][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-08-10 16:03:42.423][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-08-10 16:03:42.424][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-08-10 16:03:42.425][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-08-10 16:03:42.426][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-08-10 16:03:42.427][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-08-10 16:03:42.428][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-08-10 16:03:42.429][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-08-10 16:03:42.430][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-08-10 16:03:42.431][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-08-10 16:03:42.432][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-08-10 16:03:42.433][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-08-10 16:03:42.434][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:03:42.435][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:03:42.436][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-08-10 16:03:42.437][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-08-10 16:03:42.438][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-08-10 16:03:42.439][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-08-10 16:03:42.440][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-08-10 16:03:42.441][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-08-10 16:03:42.442][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-08-10 16:03:42.443][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-08-10 16:03:42.444][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-08-10 16:03:42.445][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-08-10 16:03:42.446][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-08-10 16:03:42.447][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-08-10 16:03:42.448][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-08-10 16:03:42.449][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-08-10 16:03:42.450][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-08-10 16:03:42.451][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-08-10 16:03:42.452][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-08-10 16:03:42.453][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-08-10 16:03:42.455][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-08-10 16:03:42.456][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-08-10 16:03:42.457][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-08-10 16:03:42.458][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-08-10 16:03:42.459][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-08-10 16:03:42.460][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-08-10 16:03:42.461][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-08-10 16:03:42.462][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-08-10 16:03:42.463][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-08-10 16:03:42.464][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-08-10 16:03:42.465][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-08-10 16:03:42.466][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:03:42.467][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-08-10 16:03:42.468][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-08-10 16:03:42.469][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-08-10 16:03:42.470][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-08-10 16:03:42.471][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-08-10 16:03:42.472][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-08-10 16:03:42.473][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-08-10 16:03:42.474][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-08-10 16:03:42.474][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-08-10 16:03:42.475][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-08-10 16:03:42.476][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-08-10 16:03:42.477][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-08-10 16:03:42.478][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-08-10 16:03:42.479][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-08-10 16:03:42.480][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-08-10 16:03:42.481][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-08-10 16:03:42.482][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-08-10 16:03:42.483][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-08-10 16:03:42.484][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-08-10 16:03:42.485][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-08-10 16:03:42.486][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-08-10 16:03:42.487][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-08-10 16:03:42.488][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-08-10 16:03:42.489][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-08-10 16:03:42.490][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-08-10 16:03:42.491][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-08-10 16:03:42.492][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-08-10 16:03:42.493][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-08-10 16:03:42.494][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-08-10 16:03:42.495][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-08-10 16:03:42.496][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-08-10 16:03:42.497][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-08-10 16:03:42.498][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-08-10 16:03:42.499][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-08-10 16:03:42.500][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-08-10 16:03:42.501][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-08-10 16:03:42.502][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-08-10 16:03:42.503][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-08-10 16:03:42.505][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-08-10 16:03:42.505][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-08-10 16:03:42.506][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.507][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.517][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.537][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-08-10 16:03:42.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-08-10 16:03:42.585][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-08-10 16:03:42.587][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-08-10 16:03:42.588][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.589][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-08-10 16:03:42.590][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.596][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.597][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.598][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.599][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.600][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.601][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-08-10 16:03:42.602][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.603][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.604][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-08-10 16:03:42.604][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.605][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-08-10 16:03:42.605][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-08-10 16:03:42.606][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.606][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.607][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:03:42.608][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.609][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.609][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.610][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.611][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.612][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-08-10 16:03:42.612][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-08-10 16:03:42.613][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.614][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.615][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.616][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-08-10 16:03:42.617][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.618][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-08-10 16:03:42.618][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.619][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.620][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.621][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.621][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.622][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.623][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:42.624][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.624][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.625][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-08-10 16:03:42.626][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-08-10 16:03:42.627][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.628][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:42.629][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-08-10 16:03:42.630][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.630][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.631][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.632][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.633][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.634][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:42.634][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:42.635][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.635][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.636][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.637][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.638][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-08-10 16:03:42.639][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.640][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-08-10 16:03:42.641][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.641][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.642][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.643][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.643][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.644][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.645][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:42.646][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.646][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.647][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-08-10 16:03:42.648][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-08-10 16:03:42.649][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.650][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-08-10 16:03:42.650][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-08-10 16:03:42.650][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-08-10 16:03:42.651][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:03:42.652][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.655][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.656][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:42.656][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:42.656][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:03:42.657][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.657][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.658][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.659][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:42.660][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:03:42.661][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.662][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-08-10 16:03:42.663][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.664][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-08-10 16:03:42.664][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.665][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.666][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.667][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.667][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-08-10 16:03:42.668][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-08-10 16:03:42.669][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.669][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-08-10 16:03:42.670][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-08-10 16:03:42.671][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-08-10 16:03:42.671][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-08-10 16:03:42.671][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-08-10 16:03:42.672][self$setPropertyValue]
biodb.DEBUG[2024-08-10 16:03:42.673][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-08-10 16:03:42.674][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.675][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-08-10 16:03:42.676][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-08-10 16:03:42.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-08-10 16:03:42.677][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-08-10 16:03:42.678][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-08-10 16:03:42.678][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-08-10 16:03:42.678][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-08-10 16:03:42.678][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-08-10 16:03:42.679][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-08-10 16:03:42.680][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-08-10 16:03:42.680][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:42.685][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-08-10 16:03:42.686][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-08-10 16:03:42.687][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-08-10 16:03:42.688][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-08-10 16:03:42.689][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-08-10 16:03:42.690][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-08-10 16:03:42.694][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:03:42.695][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-08-10 16:03:42.696][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-08-10 16:03:42.697][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-08-10 16:03:42.698][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:42.699][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:42.700][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-08-10 16:03:42.701][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:42.701][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-08-10 16:03:42.702][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-08-10 16:03:42.706][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-08-10 16:03:42.709][biodb::testThat]
biodb.INFO [2024-08-10 16:03:42.710][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-08-10 16:03:42.711][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:42.712][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:42.714][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-08-10 16:03:42.715][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:42.717][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-08-10 16:03:42.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.730][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.743][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.776][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-08-10 16:03:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:42.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:42.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:42.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:42.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:42.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:42.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.860][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.862][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.882][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.883][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.893][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.895][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.902][ef$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:42.908][biodb::testThat]
biodb.INFO [2024-08-10 16:03:42.909][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-08-10 16:03:42.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:42.910][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:42.912][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-08-10 16:03:42.913][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-08-10 16:03:42.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-08-10 16:03:42.916][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-08-10 16:03:42.918][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-08-10 16:03:42.919][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-08-10 16:03:42.920][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-08-10 16:03:42.920][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-08-10 16:03:42.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-08-10 16:03:42.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:42.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:42.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:42.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:42.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:42.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-08-10 16:03:42.931][ef$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.932][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.933][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.937][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.938][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.939][ef$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-08-10 16:03:42.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-08-10 16:03:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-08-10 16:03:42.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-08-10 16:03:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-08-10 16:03:42.972][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-08-10 16:03:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-08-10 16:03:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-08-10 16:03:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:42.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-08-10 16:03:42.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:42.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:42.988][biodb::testThat]
biodb.INFO [2024-08-10 16:03:42.989][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-08-10 16:03:42.990][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:42.990][biodb::testThat]
biodb.INFO [2024-08-10 16:03:42.995][biodb::testThat]
biodb.INFO [2024-08-10 16:03:42.996][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-08-10 16:03:42.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:42.997][biodb::testThat]
biodb.WARN [2024-08-10 16:03:43.000][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-08-10 16:03:43.002][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-08-10 16:03:43.009][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.010][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-08-10 16:03:43.011][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:43.011][biodb::testThat]
biodb.TRACE[2024-08-10 16:03:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.030][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:43.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.036][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.049][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-08-10 16:03:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-08-10 16:03:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-08-10 16:03:43.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.064][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:43.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-08-10 16:03:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-08-10 16:03:43.067][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:43.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-08-10 16:03:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-08-10 16:03:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-08-10 16:03:43.075][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.075][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-08-10 16:03:43.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:43.077][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.083][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.084][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-08-10 16:03:43.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:43.086][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.098][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.099][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-08-10 16:03:43.100][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:43.101][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:43.104][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-08-10 16:03:43.235][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-08-10 16:03:43.337][biodb::testThat]
biodb.INFO [2024-08-10 16:03:43.338][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-08-10 16:03:43.339][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-08-10 16:03:43.339][biodb::testThat]
biodb.DEBUG[2024-08-10 16:03:43.457][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-08-10 16:03:43.566][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-08-10 16:03:43.567][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-08-10 16:03:43.568][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-08-10 16:03:43.569][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-08-10 16:03:43.569][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-08-10 16:03:43.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-08-10 16:03:43.571][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-08-10 16:03:43.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-08-10 16:03:43.572][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-08-10 16:03:43.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]
> 
> proc.time()
   user  system elapsed 
 33.416   1.505  68.848

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)