Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-21 11:41 -0400 (Wed, 21 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4421 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4414 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1481/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
pareg 1.9.0 (landing page) Kim Philipp Jablonski
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the pareg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: pareg |
Version: 1.9.0 |
Command: chmod a+r pareg -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data pareg |
StartedAt: 2024-08-20 20:20:53 -0400 (Tue, 20 Aug 2024) |
EndedAt: 2024-08-20 20:37:09 -0400 (Tue, 20 Aug 2024) |
EllapsedTime: 976.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r pareg -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data pareg ### ############################################################################## ############################################################################## * checking for file 'pareg/DESCRIPTION' ... OK * preparing 'pareg': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'pareg.Rmd' using rmarkdown Retrieving notices: ...working... done Channels: - anaconda Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: C:\Users\biocbuild\.basilisk\1.17.2\pareg\1.9.0\pareg added / updated specs: - python=3.10.14 The following NEW packages will be INSTALLED: bzip2 anaconda/win-64::bzip2-1.0.8-h2bbff1b_6 ca-certificates anaconda/win-64::ca-certificates-2024.7.2-haa95532_0 libffi anaconda/win-64::libffi-3.4.4-hd77b12b_1 openssl anaconda/win-64::openssl-3.0.14-h827c3e9_0 pip anaconda/win-64::pip-24.2-py310haa95532_0 python anaconda/win-64::python-3.10.14-he1021f5_1 setuptools anaconda/win-64::setuptools-72.1.0-py310haa95532_0 sqlite anaconda/win-64::sqlite-3.45.3-h2bbff1b_0 tk anaconda/win-64::tk-8.6.14-h0416ee5_0 tzdata anaconda/noarch::tzdata-2024a-h04d1e81_0 vc anaconda/win-64::vc-14.40-h2eaa2aa_0 vs2015_runtime anaconda/win-64::vs2015_runtime-14.40.33807-h98bb1dd_0 wheel anaconda/win-64::wheel-0.43.0-py310haa95532_0 xz anaconda/win-64::xz-5.4.6-h8cc25b3_1 zlib anaconda/win-64::zlib-1.2.13-h8cc25b3_1 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - anaconda Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done # All requested packages already installed. Channels: - anaconda Platform: win-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed LibMambaUnsatisfiableError: Encountered problems while solving: - package tensorflow-base-2.10.0-gpu_py37h9761872_0 requires python >=3.7,<3.8.0a0, but none of the providers can be installed Could not solve for environment specs The following packages are incompatible \u251c\u2500 python 3.10.14** is installable and it requires \u2502 \u2514\u2500 openssl >=3.0.13,<4.0a0 , which can be installed; \u2514\u2500 tensorflow 2.10.0** is not installable because there are no viable options \u251c\u2500 tensorflow 2.10.0 would require \u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py37he3c91d7_0|2.10.0 gpu_py37h9761872_0], which requires \u2502 \u2514\u2500 python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported; \u251c\u2500 tensorflow 2.10.0 would require \u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py310he3c91d7_0|2.10.0 gpu_py310h9761872_0|2.10.0 mkl_py310h6a7f48e_0], which requires \u2502 \u2514\u2500 openssl >=1.1.1s,<1.1.2a , which conflicts with any installable versions previously reported; \u251c\u2500 tensorflow 2.10.0 would require \u2502 \u2514\u2500 tensorflow-base [2.10.0 eigen_py38he3c91d7_0|2.10.0 gpu_py38h9761872_0|2.10.0 mkl_py38h6a7f48e_0], which requires \u2502 \u2514\u2500 python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported; \u2514\u2500 tensorflow 2.10.0 would require \u2514\u2500 tensorflow-base [2.10.0 eigen_py39he3c91d7_0|2.10.0 gpu_py39h9761872_0|2.10.0 mkl_py39h6a7f48e_0], which requires \u2514\u2500 python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported. Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd) Error: processing vignette 'pareg.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building 'pareg.Rmd' --- re-building 'pathway_similarities.Rmd' using rmarkdown --- finished re-building 'pathway_similarities.Rmd' SUMMARY: processing the following file failed: 'pareg.Rmd' Error: Vignette re-building failed. Execution halted