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This page was generated on 2024-09-27 12:30 -0400 (Fri, 27 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4451
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4417
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4456
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4489
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4436
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4435
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1484/2262HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pareg 1.9.0  (landing page)
Kim Philipp Jablonski
Snapshot Date: 2024-09-26 13:40 -0400 (Thu, 26 Sep 2024)
git_url: https://git.bioconductor.org/packages/pareg
git_branch: devel
git_last_commit: c9db169
git_last_commit_date: 2024-04-30 11:41:46 -0400 (Tue, 30 Apr 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped


BUILD results for pareg on lconway

To the developers/maintainers of the pareg package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: pareg
Version: 1.9.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
StartedAt: 2024-09-26 18:01:51 -0400 (Thu, 26 Sep 2024)
EndedAt: 2024-09-26 18:04:31 -0400 (Thu, 26 Sep 2024)
EllapsedTime: 160.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################


* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
2024-09-26 18:02:44.500 R[8745:349554745] XType: com.apple.fonts is not accessible.
2024-09-26 18:02:44.501 R[8745:349554745] XType: XTFontStaticRegistry is enabled.
Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.17.2/pareg/1.9.0/pareg

  added / updated specs:
    - python=3.10.14


The following NEW packages will be INSTALLED:

  bzip2              anaconda/osx-64::bzip2-1.0.8-h6c40b1e_6 
  ca-certificates    anaconda/osx-64::ca-certificates-2024.7.2-hecd8cb5_0 
  libffi             anaconda/osx-64::libffi-3.4.4-hecd8cb5_1 
  ncurses            anaconda/osx-64::ncurses-6.4-hcec6c5f_0 
  openssl            anaconda/osx-64::openssl-3.0.15-h46256e1_0 
  pip                anaconda/osx-64::pip-24.2-py310hecd8cb5_0 
  python             anaconda/osx-64::python-3.10.14-h5ee71fb_1 
  readline           anaconda/osx-64::readline-8.2-hca72f7f_0 
  setuptools         anaconda/osx-64::setuptools-75.1.0-py310hecd8cb5_0 
  sqlite             anaconda/osx-64::sqlite-3.45.3-h6c40b1e_0 
  tk                 anaconda/osx-64::tk-8.6.14-h4d00af3_0 
  tzdata             anaconda/noarch::tzdata-2024a-h04d1e81_0 
  wheel              anaconda/osx-64::wheel-0.44.0-py310hecd8cb5_0 
  xz                 anaconda/osx-64::xz-5.4.6-h6c40b1e_1 
  zlib               anaconda/osx-64::zlib-1.2.13-h4b97444_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

# All requested packages already installed.

Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - nothing provides openssl >=1.1.1,<1.1.2.0a0 needed by python-3.7.1-haf84260_3

Could not solve for environment specs
The following packages are incompatible
├─ python 3.10.14**  is installable and it requires
│  └─ openssl >=3.0.13,<4.0a0 , which can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py37h61e1807_0, which requires
   │     └─ python >=3.7,<3.8.0a0  but there are no viable options
   │        ├─ python [3.7.0|3.7.1|...|3.7.9] conflicts with any installable versions previously reported;
   │        └─ python 3.7.1 would require
   │           └─ openssl >=1.1.1,<1.1.2.0a0 , which does not exist (perhaps a missing channel);
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py310h61e1807_0, which requires
   │     └─ openssl >=1.1.1s,<1.1.2a , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py38h61e1807_0, which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base 2.10.0 eigen_py39h61e1807_0, which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.


Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted