Pierrick Roger
| Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: devel |
| git_last_commit: dfe3f6c |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-06 11:39 -0400 (Sat, 06 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 197/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-07-05 22:02:21 -0400 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 22:04:10 -0400 (Fri, 05 Jul 2024) |
| EllapsedTime: 108.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.11.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 2.28 1.69 5.07
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-05 22:03:13.441][biodb::testContext]
biodb.INFO [2024-07-05 22:03:13.445][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:03:13.447][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-05 22:03:13.448][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:03:13.450][biodb::testContext]
biodb.INFO [2024-07-05 22:03:13.457][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:03:13.459][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:03:13.468][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:03:13.469][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:03:13.470][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.475][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:03:13.509][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.513][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:03:13.515][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.518][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:03:13.519][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:03:13.521][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:03:13.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.525][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:03:13.526][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:03:13.527][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.531][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:03:13.532][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:03:13.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.539][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:03:13.540][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:03:13.542][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:03:13.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.548][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:03:13.549][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.555][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:03:13.556][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:03:13.558][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:03:13.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.563][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:03:13.564][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:03:13.565][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:03:13.566][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:03:13.567][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:03:13.568][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:03:13.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.573][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:03:13.574][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:03:13.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.578][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:03:13.579][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:03:13.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.584][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:03:13.586][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:03:13.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.592][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:03:13.593][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:03:13.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.598][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:03:13.599][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:03:13.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.603][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:03:13.606][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:03:13.614][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:03:13.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.620][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:03:13.622][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:03:13.623][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:03:13.624][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.631][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:03:13.658][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.675][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:03:13.677][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.679][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:03:13.680][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.681][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.682][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.683][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.684][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:03:13.686][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:03:13.687][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.688][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:03:13.689][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:03:13.690][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.692][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.693][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:03:13.693][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:03:13.693][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:03:13.693][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:03:13.693][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:03:13.694][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:03:13.696][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.697][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.698][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:03:13.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.701][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.703][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.704][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:03:13.705][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:03:13.706][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.714][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.715][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:03:13.720][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.722][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:03:13.723][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.724][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:03:13.725][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.726][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.728][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.729][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.730][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:03:13.731][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:03:13.732][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.734][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:03:13.735][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:03:13.736][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.737][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.738][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:03:13.738][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:03:13.738][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:03:13.738][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:03:13.738][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:03:13.739][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:03:13.740][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.741][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.742][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:03:13.743][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.744][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.746][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.747][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.748][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:03:13.749][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:03:13.750][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.751][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.753][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:03:13.755][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.756][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:03:13.758][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.759][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:03:13.760][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.761][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.763][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.764][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.766][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:03:13.767][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:03:13.768][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.770][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:03:13.771][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:03:13.772][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.773][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.774][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.775][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:03:13.776][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.778][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:03:13.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.780][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.781][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.782][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:03:13.784][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:03:13.785][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.786][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.787][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:03:13.789][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.790][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:03:13.791][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:03:13.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.794][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.796][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.797][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.798][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:03:13.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:03:13.800][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.801][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:03:13.802][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:03:13.803][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.804][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:13.805][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.806][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:03:13.807][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.809][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:03:13.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:13.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:13.812][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:03:13.813][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.814][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:03:13.815][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:03:13.816][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:13.817][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:03:13.820][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:03:13.821][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.869][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:13.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:13.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:13.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:13.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:13.923][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:03:13.928][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:03:13.929][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:03:13.937][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:03:13.938][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:03:13.940][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:03:13.941][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:03:13.942][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:03:13.944][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:03:13.945][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:03:13.946][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:03:13.948][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:03:13.949][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:03:13.951][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:03:13.952][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:03:13.953][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:03:13.955][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:03:13.956][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:03:13.958][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:03:13.959][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:03:13.961][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:03:13.962][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:03:13.963][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:03:13.965][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:03:13.966][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:03:13.968][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:03:13.969][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:03:13.971][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:03:13.972][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:03:13.973][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:03:13.975][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:03:13.976][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:03:13.978][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:03:13.979][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:03:13.981][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:03:13.983][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:03:13.984][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:03:13.986][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:03:13.987][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:03:13.988][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:03:13.990][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:03:13.991][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:03:13.992][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:03:13.994][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:03:13.995][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:03:13.997][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:03:13.998][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:03:14.000][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:03:14.001][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:03:14.002][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:03:14.004][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:03:14.005][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:03:14.007][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:03:14.008][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:03:14.010][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:03:14.011][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:03:14.012][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:03:14.014][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:03:14.015][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:03:14.017][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:03:14.018][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:03:14.019][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:03:14.021][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:03:14.022][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:03:14.023][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:03:14.025][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:03:14.026][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:03:14.028][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:03:14.029][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:03:14.031][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:03:14.032][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:03:14.033][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:03:14.035][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:03:14.036][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:03:14.038][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:03:14.039][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:03:14.041][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:03:14.042][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:03:14.043][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:03:14.045][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:03:14.046][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:03:14.048][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:03:14.049][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:03:14.067][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:03:14.069][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:03:14.072][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:03:14.073][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.075][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:03:14.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:14.210][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:03:14.219][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:03:14.221][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:14.222][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:03:14.223][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:14.224][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:03:14.225][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:14.226][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:03:14.227][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:14.228][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:03:14.229][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:03:14.230][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:03:14.231][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:14.233][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:03:14.234][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:03:14.235][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:03:14.236][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:03:14.237][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:03:14.237][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:03:14.237][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:03:14.238][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:03:14.239][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:14.240][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:14.241][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:03:14.242][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:03:14.243][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:03:14.244][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:03:14.245][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:14.245][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:03:14.246][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:03:14.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:03:14.248][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:03:14.249][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:03:14.249][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:03:14.255][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:03:14.256][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:03:14.258][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:03:14.259][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:03:14.261][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:03:14.262][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:03:14.283][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:03:14.284][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:03:14.288][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:03:14.291][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:03:14.294][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:03:14.295][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:03:14.297][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:03:14.298][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:03:14.307][biodb::testThat]
biodb.INFO [2024-07-05 22:03:14.308][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-05 22:03:14.310][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:14.311][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:14.315][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-05 22:03:14.317][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:14.320][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:14.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:14.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:14.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:14.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:14.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:14.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:14.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:14.367][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.387][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:14.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:14.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.420][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.421][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.424][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:14.431][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:14.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.433][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:14.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.439][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.440][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.447][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:14.448][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:14.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.456][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:14.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.459][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.461][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:14.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:14.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:14.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.468][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.474][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.483][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:14.484][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:14.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.487][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:14.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.536][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:14.537][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:14.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:14.615][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-05 22:03:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:14.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:14.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:14.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:14.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:14.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:14.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:14.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.822][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:14.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:14.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.879][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.892][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.894][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:14.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:14.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.929][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:14.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:14.997][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:14.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.019][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.056][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.061][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.066][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.106][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.108][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.111][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.155][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.160][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.187][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.188][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.225][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.228][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.262][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.288][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.289][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.298][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.310][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:15.311][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:15.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.314][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.337][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.348][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:15.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.368][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.375][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.379][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.401][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.406][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:15.422][biodb::testThat]
biodb.INFO [2024-07-05 22:03:15.424][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-05 22:03:15.425][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:15.426][biodb::testThat]
biodb.DEBUG[2024-07-05 22:03:15.440][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-05 22:03:15.448][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:15.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-05 22:03:15.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:15.458][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-05 22:03:15.460][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:15.487][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:15.489][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:15.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:15.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:15.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:15.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:15.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:15.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:15.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:15.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.572][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.597][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.600][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.603][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.610][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:15.611][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:15.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.622][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:15.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.628][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.629][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.632][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.641][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.642][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.646][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:15.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.650][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:15.652][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:15.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:15.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:15.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.660][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.661][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:15.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.669][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.672][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.680][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:15.681][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:15.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:15.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:15.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:15.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:15.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:15.746][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-05 22:03:15.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-05 22:03:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-05 22:03:15.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-05 22:03:15.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-05 22:03:15.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-05 22:03:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-05 22:03:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:15.788][biodb::testThat]
biodb.INFO [2024-07-05 22:03:15.789][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-05 22:03:15.790][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:15.791][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:15.795][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.796][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.798][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:15.800][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-05 22:03:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:15.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:15.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:15.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:15.847][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-05 22:03:15.851][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:03:15.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:15.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:03:15.890][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:15.892][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:03:15.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:15.916][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:15.917][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:15.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-07-05 22:03:16.625][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-07-05 22:03:17.208][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:17.213][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2024-07-05 22:03:17.232][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2024-07-05 22:03:17.239][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-05 22:03:17.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:17.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:17.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.279][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.280][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.281][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.284][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:17.294][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.295][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-05 22:03:17.296][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:17.297][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:17.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:17.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:17.401][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:17.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:17.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:17.426][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-05 22:03:17.460][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.461][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-05 22:03:17.462][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:17.463][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:17.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.518][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:17.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:17.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:17.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:17.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:17.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:03:17.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:03:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:17.594][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:03:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:17.611][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.613][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-05 22:03:17.615][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:17.616][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.630][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.632][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-05 22:03:17.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:17.635][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.649][biodb::testThat]
biodb.INFO [2024-07-05 22:03:17.650][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-05 22:03:17.651][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:17.652][biodb::testThat]
biodb.DEBUG[2024-07-05 22:03:17.657][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-05 22:03:18.228][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-05 22:03:19.313][biodb::testThat]
biodb.INFO [2024-07-05 22:03:19.315][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-05 22:03:19.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:19.317][biodb::testThat]
biodb.DEBUG[2024-07-05 22:03:19.781][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-05 22:03:20.310][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:20.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:20.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.315][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:20.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:20.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.319][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:20.326][biodb::testThat]
biodb.INFO [2024-07-05 22:03:20.330][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-05 22:03:20.331][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:20.332][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:20.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:20.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:20.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:20.436][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:20.447][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:20.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:20.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:20.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:03:20.504][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:20.508][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:20.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:20.511][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:20.513][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-05 22:03:20.538][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:03:20.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:03:20.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:20.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:20.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:20.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:20.580][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:20.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:03:20.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:20.597][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:03:20.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:20.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:20.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:20.616][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:20.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:20.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:20.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:20.620][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-05 22:03:20.668][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:20.671][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-05 22:03:20.672][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:20.674][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:20.675][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:20.676][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:20.677][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:20.679][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:20.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:20.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:20.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:20.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:20.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:20.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:20.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:20.696][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.DEBUG[2024-07-05 22:03:20.710][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:20.711][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:20.723][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288".
biodb.TRACE[2024-07-05 22:03:21.147][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=192288).
biodb.DEBUG[2024-07-05 22:03:21.595][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:21.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.content"
biodb.TRACE[2024-07-05 22:03:21.765][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7e76f7a384ab933ed01801c92c3eec77.request"
biodb.TRACE[2024-07-05 22:03:21.769][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml"
biodb.DEBUG[2024-07-05 22:03:21.772][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:21.774][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:21.776][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:21.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:21.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:21.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:21.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:21.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:21.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:21.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:21.796][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.807][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:21.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:21.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.812][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:21.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:21.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:21.817][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:21.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.819][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.821][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:21.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:21.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:21.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:21.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:21.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:21.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:21.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:21.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:21.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:21.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:21.846][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:21.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.849][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.851][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:21.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.855][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:21.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:21.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:21.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.866][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:21.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:21.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.873][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:21.874][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:21.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.876][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:21.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:21.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.882][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:21.883][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:21.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:21.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:21.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.896][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:21.897][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:21.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.901][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:21.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:21.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:21.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:21.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:21.953][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-05 22:03:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:21.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:21.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:22.504][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:22.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:03:22.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:22.540][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:03:22.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:22.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:22.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:22.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:22.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:22.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:22.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:22.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:22.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:22.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:22.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:22.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:22.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:22.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:22.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:22.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:22.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:22.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:22.625][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-05 22:03:22.626][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:22.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-05 22:03:22.630][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:22.631][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:22.632][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:22.633][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:22.634][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:22.635][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:22.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:22.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:22.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:22.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:22.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:22.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:22.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:22.664][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.DEBUG[2024-07-05 22:03:22.668][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:22.669][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:22.670][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892".
biodb.TRACE[2024-07-05 22:03:23.093][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=209892).
biodb.DEBUG[2024-07-05 22:03:23.521][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:23.526][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.content"
biodb.TRACE[2024-07-05 22:03:23.531][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7a3362365076d47cdf0955cccdd37bcf.request"
biodb.TRACE[2024-07-05 22:03:23.535][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml"
biodb.DEBUG[2024-07-05 22:03:23.538][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:23.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:23.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:23.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:23.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:23.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:23.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:23.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:23.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:23.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:23.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.562][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.564][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.569][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:23.571][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:23.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.573][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:23.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:23.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.578][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:23.580][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:23.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:23.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:23.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.588][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:23.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:23.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:23.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:23.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:23.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:23.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.605][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:23.606][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:23.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.610][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:23.611][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.614][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:23.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.618][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:23.619][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:23.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.622][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:23.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:23.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:23.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.631][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.632][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:23.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:23.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:23.643][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:23.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:23.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:23.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:23.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:23.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:23.703][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-05 22:03:23.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:23.743][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:23.775][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:23.777][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:23.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:23.780][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:03:23.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:23.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:23.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:23.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:23.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:23.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:23.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:23.797][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:23.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:23.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:23.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:23.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:23.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:23.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:23.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:23.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:23.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:23.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:23.837][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-05 22:03:23.838][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:23.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-05 22:03:23.843][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:23.844][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:23.846][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:23.847][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:23.848][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:23.849][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:23.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:23.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:23.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:23.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:23.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:23.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:23.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:23.874][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2024-07-05 22:03:23.878][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:23.879][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:23.881][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2024-07-05 22:03:24.303][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2024-07-05 22:03:24.724][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:24.728][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2024-07-05 22:03:24.733][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2024-07-05 22:03:24.738][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2024-07-05 22:03:24.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:24.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:24.746][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:24.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:24.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:24.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:24.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:24.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:24.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:24.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:24.766][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.777][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.783][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:24.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:24.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.786][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.787][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:24.789][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:24.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:24.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:24.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:24.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:24.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:24.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:24.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.804][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.805][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:24.806][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:24.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:24.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.813][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.814][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:24.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:24.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:24.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:24.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:24.824][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:24.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.826][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.828][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:24.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.832][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:24.833][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:24.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.836][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:24.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:24.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:24.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:24.887][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-05 22:03:24.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:24.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:24.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:24.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:24.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:24.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:24.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:24.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:24.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:24.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:24.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:24.927][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-05 22:03:24.933][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:24.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-05 22:03:24.936][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:24.938][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:24.939][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:24.940][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:24.941][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:24.942][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:24.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:24.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:24.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:24.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:24.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:24.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:24.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:24.966][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2024-07-05 22:03:24.973][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:24.974][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:24.976][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2024-07-05 22:03:25.401][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2024-07-05 22:03:25.821][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:25.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2024-07-05 22:03:25.830][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2024-07-05 22:03:25.834][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2024-07-05 22:03:25.836][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:25.838][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:25.840][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:25.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:25.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:25.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:25.852][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:25.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:25.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:25.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:25.859][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.876][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:25.877][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:25.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.881][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:25.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:25.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.884][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:25.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:25.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:25.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:25.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:25.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:25.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.898][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:25.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:25.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:25.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.906][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.907][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:25.908][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:25.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:25.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:25.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:25.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:25.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:25.926][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:25.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:25.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:25.980][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-05 22:03:25.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:25.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:26.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:26.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:26.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:26.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:26.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:26.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:26.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:26.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:26.024][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-05 22:03:26.025][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:26.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-05 22:03:26.029][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:26.030][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:26.031][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:26.033][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:26.034][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:26.035][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:26.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:26.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:26.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:26.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:26.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:26.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:26.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:26.066][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2024-07-05 22:03:26.069][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:26.070][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:26.072][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2024-07-05 22:03:26.517][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2024-07-05 22:03:26.952][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:26.955][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2024-07-05 22:03:26.960][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2024-07-05 22:03:26.963][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2024-07-05 22:03:26.966][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:26.968][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:26.970][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:26.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:26.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:26.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:26.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:26.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:26.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:26.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:26.994][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:26.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:26.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.013][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:27.015][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:27.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.017][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:27.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:27.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.021][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.023][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:27.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:27.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.026][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:27.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:27.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:27.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.036][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:27.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:27.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:27.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:27.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:27.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.048][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:27.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.055][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:27.057][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:27.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:27.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:27.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:27.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:27.121][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-05 22:03:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:27.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:27.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:27.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:27.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:27.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:27.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:27.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:27.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:27.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:27.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:27.160][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-05 22:03:27.161][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:27.163][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-05 22:03:27.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:27.555][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:27.556][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:27.558][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:27.559][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:27.560][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:27.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:27.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:27.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:27.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:27.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:27.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:27.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:27.618][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2024-07-05 22:03:27.622][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:27.623][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:27.626][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2024-07-05 22:03:28.049][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2024-07-05 22:03:28.513][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:28.516][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2024-07-05 22:03:28.523][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2024-07-05 22:03:28.527][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2024-07-05 22:03:28.531][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:28.533][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:28.535][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:28.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:28.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:28.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:28.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:28.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:28.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:28.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:28.561][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.578][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:28.580][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:28.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.583][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:28.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:28.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:28.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:28.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:28.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.597][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:28.598][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:28.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:28.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:28.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:28.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.615][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:28.616][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:28.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.619][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:28.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:28.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.624][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:28.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:28.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.636][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.641][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:28.642][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:28.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:28.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.650][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:28.651][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:28.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.659][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:28.660][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:28.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.664][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:28.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:28.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:28.717][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-05 22:03:28.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:28.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:28.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:28.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:28.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:28.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:28.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:28.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:28.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:28.747][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-05 22:03:28.748][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:28.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-05 22:03:28.751][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:28.753][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:28.754][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:28.755][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:28.756][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:28.757][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:28.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:28.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:28.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:28.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:28.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:28.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:28.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:28.778][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2024-07-05 22:03:28.781][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:28.782][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:28.784][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2024-07-05 22:03:29.203][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2024-07-05 22:03:29.827][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:29.831][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2024-07-05 22:03:29.841][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2024-07-05 22:03:29.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2024-07-05 22:03:29.849][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:29.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:29.852][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:29.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:29.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:29.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:29.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:29.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:29.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:29.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:29.868][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:29.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:29.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.871][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:29.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:29.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.877][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:29.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:29.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.880][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:29.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.886][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:29.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.889][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:29.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:29.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:29.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:29.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:29.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:29.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:29.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:29.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:29.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:29.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.924][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:29.925][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:29.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.933][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:29.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:29.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.936][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.942][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:29.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:29.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:29.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.957][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:29.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:29.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:29.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:29.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:29.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:29.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:29.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:29.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:29.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:29.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:29.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:30.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:30.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:30.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:30.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:30.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:30.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:30.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:30.019][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-05 22:03:30.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:30.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:30.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:30.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:30.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:30.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:30.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:30.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:30.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:30.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:30.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:30.050][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-05 22:03:30.051][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:30.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-05 22:03:30.055][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:30.056][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:30.057][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:30.058][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:30.059][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:30.060][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:30.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:30.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:30.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:30.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:30.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:30.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:30.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:30.107][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2024-07-05 22:03:30.112][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:30.113][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:30.116][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2024-07-05 22:03:30.553][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2024-07-05 22:03:30.974][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:30.978][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2024-07-05 22:03:30.984][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2024-07-05 22:03:30.987][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2024-07-05 22:03:30.989][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:30.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:30.992][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:30.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:30.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:30.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:31.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:31.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:31.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:31.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:31.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.020][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:31.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:31.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:31.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:31.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.028][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:31.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:31.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:31.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:31.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:31.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:31.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:31.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:31.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.046][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:31.047][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:31.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:31.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:31.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:31.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:31.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.060][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:31.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:31.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.076][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:31.077][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:31.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:31.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.084][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:31.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:31.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:31.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:31.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.093][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:31.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:31.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.096][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.098][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:31.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:31.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.102][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:31.103][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:31.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.105][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:31.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:31.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:31.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:31.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:31.157][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-05 22:03:31.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:31.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:31.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:31.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:31.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:31.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:31.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:31.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:31.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:31.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:31.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:31.193][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-05 22:03:31.195][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:31.196][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-05 22:03:31.198][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:31.199][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:31.200][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:31.202][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:31.203][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:31.204][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:31.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:31.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:31.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:31.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:31.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:31.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:31.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:31.220][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2024-07-05 22:03:31.223][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:31.225][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:31.226][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2024-07-05 22:03:31.654][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2024-07-05 22:03:32.077][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:32.080][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2024-07-05 22:03:32.086][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2024-07-05 22:03:32.090][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2024-07-05 22:03:32.092][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:32.093][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:32.094][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:32.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:32.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:32.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:32.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:32.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:32.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:32.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:32.111][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.112][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.120][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:32.121][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:32.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.124][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:32.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:32.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:32.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:32.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.132][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:32.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:32.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.150][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:32.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:32.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.155][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:32.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:32.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.164][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:32.165][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:32.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.167][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.169][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:32.170][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.174][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:32.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:32.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:32.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.182][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:32.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:32.189][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:32.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:32.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.197][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:32.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:32.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.201][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:32.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:32.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:32.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:32.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.210][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.211][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:32.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:32.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:32.274][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-05 22:03:32.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.280][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:32.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:32.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:32.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:32.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:32.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:32.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:32.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:32.306][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-05 22:03:32.307][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:32.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-05 22:03:32.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:32.312][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:32.313][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:32.314][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:32.315][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:32.316][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:32.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:32.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:32.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:32.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:32.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:32.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:32.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:32.333][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2024-07-05 22:03:32.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:32.337][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:32.338][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2024-07-05 22:03:32.771][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2024-07-05 22:03:33.193][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:33.196][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2024-07-05 22:03:33.202][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2024-07-05 22:03:33.213][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2024-07-05 22:03:33.218][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:33.221][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:33.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:33.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:33.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:33.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:33.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:33.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:33.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:33.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:33.251][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.255][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.269][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:33.271][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:33.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.275][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:33.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:33.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.280][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:33.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:33.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.283][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:33.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:33.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:33.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:33.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.299][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:33.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:33.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.303][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:33.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:33.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:33.310][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:33.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.313][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:33.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:33.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:33.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:33.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:33.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.331][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:33.332][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:33.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.334][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:33.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:33.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:33.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:33.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:33.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:33.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:33.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:33.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:33.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:33.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:33.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:33.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:33.409][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-05 22:03:33.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:33.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:33.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:33.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:33.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:33.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:33.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:33.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:33.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:33.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:33.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:33.437][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-05 22:03:33.438][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:33.440][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-05 22:03:33.441][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:33.443][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:33.444][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:33.445][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:33.446][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:33.447][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:33.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:33.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:33.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:33.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:33.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:33.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:33.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:33.464][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2024-07-05 22:03:33.467][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:33.468][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:33.469][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2024-07-05 22:03:33.895][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2024-07-05 22:03:34.317][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:34.320][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2024-07-05 22:03:34.324][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2024-07-05 22:03:34.334][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2024-07-05 22:03:34.336][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:34.338][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:34.339][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:34.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:34.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:34.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:34.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:34.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:34.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:34.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:34.358][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.360][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.370][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:34.371][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:34.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:34.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.380][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:34.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:34.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.390][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:34.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:34.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.394][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:34.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:34.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.404][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:34.405][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:34.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.408][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.414][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:34.415][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:34.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.417][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.418][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:34.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.423][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.424][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.429][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:34.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:34.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.433][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:34.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:34.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.438][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:34.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:34.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:34.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:34.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:34.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.451][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:34.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:34.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:34.464][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:34.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:34.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:34.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:34.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:34.514][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-05 22:03:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.519][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:34.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:34.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:34.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:34.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:34.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:34.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:34.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:34.541][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-05 22:03:34.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:34.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-05 22:03:34.546][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:34.547][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:34.548][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:34.549][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:34.551][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:34.552][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:34.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:34.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:34.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:34.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:34.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:34.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:34.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:34.574][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2024-07-05 22:03:34.576][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:34.578][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:34.579][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2024-07-05 22:03:34.999][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2024-07-05 22:03:35.421][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:35.424][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2024-07-05 22:03:35.429][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2024-07-05 22:03:35.432][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2024-07-05 22:03:35.434][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:35.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:35.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:35.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:35.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:35.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:35.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:35.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:35.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:35.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:35.457][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.458][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.466][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:35.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.475][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:35.477][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:35.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:35.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:35.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:35.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.488][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:35.497][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:35.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:35.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.505][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:35.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:35.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.508][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.509][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:35.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.514][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:35.531][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.539][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:35.540][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:35.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.542][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:35.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:35.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.548][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:35.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:35.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:35.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:35.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:35.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:35.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:35.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:35.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:35.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:35.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:35.611][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-05 22:03:35.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:35.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:35.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:35.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:35.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:35.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:35.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:35.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:35.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:35.650][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-05 22:03:35.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:35.653][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-05 22:03:35.654][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:35.656][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:35.657][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:35.658][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:35.659][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:35.660][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:35.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:35.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:35.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:35.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:35.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:35.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:35.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:35.678][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2024-07-05 22:03:35.681][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:35.682][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:35.684][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2024-07-05 22:03:36.108][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2024-07-05 22:03:36.532][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:36.536][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2024-07-05 22:03:36.560][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2024-07-05 22:03:36.564][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2024-07-05 22:03:36.987][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:36.991][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:36.994][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:36.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:37.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:37.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:37.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:37.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:37.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:37.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:37.038][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.048][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:37.049][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:37.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:37.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:37.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.057][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:37.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.060][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:37.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:37.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:37.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:37.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.070][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.071][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:37.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:37.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.084][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:37.085][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:37.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.089][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:37.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.092][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.098][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:37.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:37.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.101][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:37.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.107][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:37.108][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:37.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.116][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:37.117][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:37.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.125][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:37.126][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:37.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:37.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:37.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:37.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:37.173][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-05 22:03:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:37.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:37.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:37.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:37.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:37.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:37.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:37.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:37.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:37.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:37.208][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-05 22:03:37.209][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:37.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-05 22:03:37.212][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:37.213][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:37.215][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:37.216][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:37.217][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:37.218][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:37.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:37.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:37.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:37.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:37.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:37.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:37.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:37.236][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2024-07-05 22:03:37.239][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:37.240][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:37.242][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2024-07-05 22:03:37.671][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2024-07-05 22:03:38.096][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:38.101][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2024-07-05 22:03:38.108][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2024-07-05 22:03:38.113][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2024-07-05 22:03:38.116][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:38.118][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:38.120][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:38.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:38.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:38.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:38.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:38.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:38.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:38.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:38.140][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.144][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.150][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:38.151][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:38.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.153][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.159][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:38.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:38.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.176][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:38.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:38.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:38.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:38.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:38.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:38.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.190][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:38.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:38.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:38.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:38.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:38.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:38.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.211][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:38.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:38.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:38.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:38.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.221][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:38.222][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:38.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:38.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:38.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.232][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:38.234][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:38.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:38.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:38.290][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-05 22:03:38.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:38.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:38.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:38.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:38.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:38.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:38.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:38.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:38.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:38.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:38.322][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-05 22:03:38.323][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:38.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-05 22:03:38.327][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:38.328][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:38.329][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:38.330][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:38.332][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:38.333][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:38.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:38.337][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:38.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:38.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:38.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:38.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:38.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:38.353][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2024-07-05 22:03:38.356][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:38.357][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:38.359][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2024-07-05 22:03:38.783][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2024-07-05 22:03:39.245][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:39.248][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2024-07-05 22:03:39.464][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2024-07-05 22:03:39.474][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2024-07-05 22:03:39.477][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:39.479][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:39.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:39.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:39.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:39.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:39.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:39.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:39.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:39.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:39.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.507][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.514][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:39.515][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:39.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.517][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.528][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.536][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:39.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:39.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:39.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:39.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:39.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:39.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:39.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:39.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.563][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.571][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:39.572][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.575][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.576][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:39.578][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.580][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:39.587][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:39.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:39.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:39.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:39.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.597][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.603][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:39.605][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:39.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.612][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:39.614][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:39.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:39.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:39.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:39.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:39.671][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-05 22:03:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:39.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:39.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:39.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:39.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:39.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:39.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:39.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:39.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:39.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:39.703][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-05 22:03:39.704][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:39.706][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-05 22:03:39.707][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:39.709][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:39.710][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:39.711][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:39.712][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:39.713][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:39.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:39.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:39.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:39.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:39.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:39.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:39.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:39.733][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2024-07-05 22:03:39.736][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:39.737][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:39.739][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2024-07-05 22:03:40.187][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2024-07-05 22:03:40.623][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:40.625][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2024-07-05 22:03:40.631][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2024-07-05 22:03:40.635][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2024-07-05 22:03:40.639][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:40.641][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:40.642][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:40.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:40.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:40.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:40.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:40.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:40.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:40.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:40.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.671][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.677][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:40.678][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:40.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:40.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.687][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:40.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:40.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.690][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.696][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:40.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:40.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.705][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:40.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:40.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.709][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.714][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:40.715][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.719][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:40.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.723][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:40.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:40.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.738][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:40.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:40.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:40.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.750][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:40.751][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:40.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.753][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:40.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:40.761][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:40.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:40.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:40.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:40.819][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-05 22:03:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:40.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:40.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:40.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:40.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:40.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:40.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:40.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:40.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:40.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:40.847][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-05 22:03:40.848][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:40.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-05 22:03:40.851][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:40.852][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:40.853][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:40.854][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:40.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:40.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:40.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:40.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:40.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:40.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:40.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:40.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:40.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:40.881][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2024-07-05 22:03:40.885][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:40.887][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:40.888][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2024-07-05 22:03:41.314][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2024-07-05 22:03:41.740][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:41.743][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2024-07-05 22:03:41.750][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2024-07-05 22:03:41.753][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2024-07-05 22:03:41.756][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:41.759][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:41.760][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:41.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:41.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:41.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:41.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:41.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:41.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:41.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:41.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.790][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:41.791][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:41.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:41.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.799][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:41.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:41.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:41.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:41.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:41.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:41.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:41.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.816][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:41.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:41.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:41.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:41.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:41.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.830][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:41.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.833][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.839][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:41.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:41.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.843][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:41.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:41.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.859][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:41.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:41.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:41.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:41.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.881][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:41.882][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:41.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.884][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.890][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:41.892][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.894][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:41.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:41.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:41.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:41.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:41.944][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-05 22:03:41.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:41.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:41.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:41.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:41.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:41.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:41.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:41.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:41.984][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-05 22:03:41.986][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:41.988][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-05 22:03:41.990][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:41.991][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:41.993][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:41.994][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:41.995][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:41.996][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:42.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:42.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:42.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:42.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:42.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:42.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:42.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:42.016][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2024-07-05 22:03:42.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:42.020][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:42.022][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2024-07-05 22:03:42.449][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2024-07-05 22:03:42.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:42.914][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2024-07-05 22:03:44.099][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2024-07-05 22:03:44.124][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2024-07-05 22:03:44.135][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:44.140][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:44.147][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:44.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:44.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:44.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:44.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:44.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:44.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:44.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:44.183][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.187][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.193][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:44.194][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:44.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:44.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.202][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:44.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:44.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.206][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:44.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:44.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:44.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.220][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:44.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:44.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.231][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:44.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:44.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.241][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.243][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:44.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:44.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:44.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.255][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.260][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:44.261][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:44.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.270][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:44.271][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:44.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.279][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:44.280][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:44.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:44.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:44.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:44.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:44.344][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-05 22:03:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:44.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:44.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:44.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:44.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:44.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:44.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:44.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:44.406][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-05 22:03:44.407][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:44.409][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-05 22:03:44.411][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:44.412][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:44.413][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:44.414][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:44.415][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:44.416][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:44.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:44.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:44.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:44.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:44.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:44.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:44.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:44.439][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2024-07-05 22:03:44.444][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:44.447][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:44.449][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2024-07-05 22:03:44.892][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2024-07-05 22:03:45.329][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:45.332][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2024-07-05 22:03:46.689][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2024-07-05 22:03:46.699][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2024-07-05 22:03:46.708][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:46.710][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:46.712][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:46.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:46.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:46.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:46.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:46.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:46.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:46.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:46.742][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.752][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:46.754][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:46.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.764][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.771][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:46.772][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:46.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.774][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:46.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:46.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:46.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:46.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.798][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:46.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:46.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.803][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:46.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:46.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.820][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:46.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:46.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.824][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.829][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:46.831][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:46.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.833][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.838][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:46.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:46.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.841][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:46.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:46.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:46.899][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-05 22:03:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:46.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:46.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:46.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:46.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:46.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:46.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:46.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:46.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:46.927][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-05 22:03:46.928][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:46.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-05 22:03:46.932][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:46.933][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:46.934][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:46.935][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:46.936][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:46.937][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:46.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:46.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:46.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:46.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:46.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:46.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:46.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:46.953][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.DEBUG[2024-07-05 22:03:46.956][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:46.957][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:46.959][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655".
biodb.TRACE[2024-07-05 22:03:47.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=198655).
biodb.DEBUG[2024-07-05 22:03:47.814][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:47.818][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.content"
biodb.TRACE[2024-07-05 22:03:49.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2e175d021d3c86c1362fa584a90fbad.request"
biodb.TRACE[2024-07-05 22:03:49.105][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml"
biodb.DEBUG[2024-07-05 22:03:49.207][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:49.223][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:49.226][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:49.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:49.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:49.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:49.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:49.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:49.245][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:49.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:49.249][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.296][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:49.298][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:49.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.302][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:49.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:49.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.307][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:49.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:49.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.318][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:49.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:49.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:49.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:49.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.331][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:49.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:49.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.337][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:49.338][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:49.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.342][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:49.343][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.345][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.346][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:49.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.351][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:49.352][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:49.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.360][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:49.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:49.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.370][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:49.371][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:49.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:49.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:49.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:49.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:49.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:49.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:49.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:49.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:49.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:49.439][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-05 22:03:49.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:49.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:49.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:49.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:49.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:49.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:49.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:49.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:49.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:49.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:49.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:49.466][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-05 22:03:49.467][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:49.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-05 22:03:49.471][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:49.472][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:49.473][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:49.474][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:49.475][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:49.476][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:49.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:49.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:49.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:49.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:49.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:49.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:49.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:49.688][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.DEBUG[2024-07-05 22:03:49.691][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:49.692][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:49.694][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045".
biodb.TRACE[2024-07-05 22:03:50.135][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=215045).
biodb.DEBUG[2024-07-05 22:03:50.560][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:50.563][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.content"
biodb.TRACE[2024-07-05 22:03:50.569][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/5fb598055294db64f197c61a6e36b01a.request"
biodb.TRACE[2024-07-05 22:03:50.573][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml"
biodb.DEBUG[2024-07-05 22:03:50.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:50.576][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:50.578][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:50.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:50.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:50.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:50.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:50.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:50.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:50.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:50.596][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:50.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:50.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:50.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:50.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.608][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:50.609][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:50.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.611][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.613][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:50.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:50.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.620][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:50.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:50.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.631][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:50.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.639][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:50.640][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:50.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.642][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.644][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:50.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.648][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:50.649][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:50.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.651][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.652][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:50.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:50.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.657][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:50.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:50.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.664][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:50.665][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:50.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.674][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:50.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:50.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.687][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:50.688][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:50.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.691][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.697][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:50.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:50.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:50.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:50.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:50.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:50.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:50.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:51.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:51.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.065][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-05 22:03:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.109][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:51.113][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:51.114][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:51.116][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:51.118][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:03:51.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.301][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.436][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:51.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:51.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:51.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:51.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:51.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:51.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:51.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:51.787][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:51.788][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:51.790][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-07-05 22:03:52.216][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-07-05 22:03:52.639][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:52.642][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content"
biodb.TRACE[2024-07-05 22:03:52.647][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.request"
biodb.DEBUG[2024-07-05 22:03:52.651][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:52.655][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:52.656][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:52.658][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2024-07-05 22:03:53.087][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2024-07-05 22:03:53.507][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:53.511][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content"
biodb.TRACE[2024-07-05 22:03:53.521][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.request"
biodb.DEBUG[2024-07-05 22:03:53.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:53.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:53.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:53.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:53.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:53.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:53.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:53.548][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-05 22:03:53.549][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:53.551][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-05 22:03:53.553][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:53.554][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:53.555][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:53.556][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:53.557][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:53.558][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:53.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:53.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:53.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:53.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:53.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:53.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:53.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:53.575][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2024-07-05 22:03:53.578][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:53.579][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:53.581][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2024-07-05 22:03:54.001][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2024-07-05 22:03:54.423][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:54.425][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2024-07-05 22:03:54.429][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2024-07-05 22:03:54.433][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2024-07-05 22:03:54.435][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:54.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:54.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:54.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:54.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:54.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:54.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:54.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:54.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:54.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:54.453][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.462][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:54.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.471][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:54.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:54.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.480][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:54.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:54.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.483][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.488][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:54.490][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:54.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:54.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.497][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:54.498][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:54.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.500][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.502][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.506][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:54.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:54.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.515][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:54.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:54.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.526][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.532][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:54.533][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:54.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.535][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:54.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:54.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:54.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:54.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:54.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:54.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:54.592][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-05 22:03:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:54.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:54.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:54.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:54.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:54.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:54.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:54.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:54.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:54.640][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:54.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:54.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:54.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:54.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:54.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:54.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:54.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:54.658][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-05 22:03:54.659][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:54.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-05 22:03:54.663][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-05 22:03:54.664][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-05 22:03:54.665][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:54.666][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:03:54.668][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-05 22:03:54.669][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-05 22:03:54.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:54.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:54.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:54.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:54.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:54.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:54.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:54.685][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2024-07-05 22:03:54.688][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-05 22:03:54.689][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-05 22:03:54.690][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2024-07-05 22:03:55.117][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2024-07-05 22:03:55.547][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-05 22:03:55.549][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2024-07-05 22:03:55.554][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2024-07-05 22:03:55.557][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2024-07-05 22:03:55.559][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-05 22:03:55.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:55.562][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:55.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.589][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.598][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:55.599][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:55.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.607][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:55.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:55.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:55.617][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:55.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:55.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.624][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:55.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:55.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:55.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:55.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:55.634][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:55.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.636][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.637][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:55.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:55.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.654][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:55.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:55.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:55.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:55.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.666][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.668][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:55.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.672][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:55.673][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.675][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:55.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.723][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-05 22:03:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.763][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:55.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:55.768][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:55.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:55.771][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:03:55.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.789][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.870][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.898][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:55.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:55.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:55.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:55.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:55.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:55.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:55.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:55.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.010][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.046][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.047][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.049][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.087][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.088][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.096][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.312][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:56.369][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:56.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:03:56.372][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:56.374][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:03:56.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.394][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.642][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.733][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.784][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.796][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.874][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.916][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:56.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:56.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:56.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:56.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:56.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:56.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:56.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:56.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:56.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:56.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.002][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:57.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:57.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:57.019][biodb::testThat]
biodb.INFO [2024-07-05 22:03:57.020][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-05 22:03:57.021][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:57.022][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:03:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:03:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.031][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:57.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:57.071][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:57.073][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:03:57.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:57.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:03:57.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:57.111][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:57.112][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:03:57.114][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:57.116][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:03:57.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:57.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.169][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:57.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.193][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.195][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.196][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.204][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.206][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.210][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:57.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:03:57.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.255][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.256][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.258][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.261][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.269][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.270][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.271][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.272][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.275][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:57.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:57.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.318][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.321][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.322][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.323][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.325][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.330][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.331][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.332][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.333][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.335][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.336][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:03:57.351][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:57.352][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:57.443][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:57.446][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:57.448][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:03:57.449][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:57.472][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:03:57.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:57.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:57.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:03:57.485][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:57.498][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:03:57.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:57.609][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:57.627][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.654][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.657][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.676][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:03:57.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.906][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.914][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.915][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.916][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.928][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.933][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:57.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:57.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:57.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:57.969][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:57.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:57.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:57.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:57.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.984][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.985][private$selectFields]
biodb.TRACE[2024-07-05 22:03:57.986][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:57.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:57.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:57.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.995][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:57.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:57.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:57.999][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.000][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.001][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.002][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.005][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:03:58.021][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:58.022][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:58.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:58.042][biodb::testThat]
biodb.INFO [2024-07-05 22:03:58.043][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-05 22:03:58.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:58.045][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:03:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:03:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:58.088][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:03:58.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.096][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:03:58.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.126][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:03:58.132][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.134][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:03:58.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.189][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:58.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.213][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.214][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.227][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.228][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.229][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.230][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.233][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.254][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:03:58.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.277][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.278][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.281][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.282][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.283][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.285][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.292][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.297][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.312][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:58.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.340][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.341][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.343][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.349][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.351][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.353][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.354][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.356][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.358][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.361][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:03:58.377][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:58.378][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:58.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.425][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:03:58.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.430][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:03:58.433][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.436][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:03:58.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:03:58.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:58.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.524][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:58.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.548][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.555][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.562][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.567][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:03:58.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.605][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.606][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.609][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.620][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.621][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.622][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.625][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.639][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:58.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.668][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.669][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.683][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.684][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.687][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.688][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.702][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:03:58.703][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:58.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:58.715][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:58.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:58.724][biodb::testThat]
biodb.INFO [2024-07-05 22:03:58.725][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-05 22:03:58.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:58.727][biodb::testThat]
biodb.TRACE[2024-07-05 22:03:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:03:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:03:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:58.770][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.774][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.775][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:03:58.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.779][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:03:58.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.792][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.808][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:58.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:58.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:03:58.814][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:58.816][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:03:58.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.836][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.853][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:58.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:58.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.893][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.903][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.904][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.905][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.908][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.917][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.932][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:03:58.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:58.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:58.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:58.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.956][private$selectFields]
biodb.TRACE[2024-07-05 22:03:58.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:58.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:58.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.963][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.970][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:58.971][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.974][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.975][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:58.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:58.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:58.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:58.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:58.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:58.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:58.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.014][private$selectFields]
biodb.TRACE[2024-07-05 22:03:59.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:59.016][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:59.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.021][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.027][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.028][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.029][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:03:59.047][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:59.048][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:03:59.128][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:59.133][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:59.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:03:59.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:59.138][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:03:59.141][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:03:59.144][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:03:59.146][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:03:59.147][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:59.149][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:03:59.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.202][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:03:59.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.252][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.253][private$selectFields]
biodb.TRACE[2024-07-05 22:03:59.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:59.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:59.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.262][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.263][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.267][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.272][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:59.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:03:59.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.311][private$selectFields]
biodb.TRACE[2024-07-05 22:03:59.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:59.313][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:59.314][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.315][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.316][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.320][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.321][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.324][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.325][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.326][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.327][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.330][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:59.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:03:59.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.371][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.372][private$selectFields]
biodb.TRACE[2024-07-05 22:03:59.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:03:59.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:03:59.375][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.376][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.377][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.379][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.380][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.381][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.386][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:03:59.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.391][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:03:59.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:03:59.407][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:03:59.408][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:03:59.434][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:59.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:03:59.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:03:59.445][biodb::testThat]
biodb.INFO [2024-07-05 22:03:59.447][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-05 22:03:59.448][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:59.449][biodb::testThat]
biodb.DEBUG[2024-07-05 22:03:59.451][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-05 22:03:59.452][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:03:59.454][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-05 22:03:59.456][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:03:59.474][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-07-05 22:03:59.477][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:59.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:03:59.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:59.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.500][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.509][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.510][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.517][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.519][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.520][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.522][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.523][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.524][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.535][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.536][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.539][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:59.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:59.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.542][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.543][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.546][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.547][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:59.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:59.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.552][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:59.553][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:59.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.555][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.556][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:59.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:59.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.604][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-05 22:03:59.605][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-05 22:03:59.618][biodb::testThat]
biodb.INFO [2024-07-05 22:03:59.620][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-05 22:03:59.621][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:03:59.622][biodb::testThat]
biodb.DEBUG[2024-07-05 22:03:59.631][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-05 22:03:59.632][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-05 22:03:59.633][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-05 22:03:59.635][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-05 22:03:59.637][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-05 22:03:59.695][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-05 22:03:59.697][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:03:59.699][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-05 22:03:59.700][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-05 22:03:59.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.720][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.721][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.723][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.729][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.730][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.733][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.738][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.739][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.741][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.742][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.744][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.747][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.748][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.751][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:59.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:59.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.760][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:59.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:59.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.764][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:59.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:59.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.767][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.769][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:59.770][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:59.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.772][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.818][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.826][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.827][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.836][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.853][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:03:59.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.862][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:03:59.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.871][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:59.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:59.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:03:59.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:03:59.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:03:59.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:59.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:59.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:03:59.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:03:59.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.897][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:59.898][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:59.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.900][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.901][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:03:59.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:03:59.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.905][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:59.906][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:59.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:03:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:03:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:03:59.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:03:59.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:03:59.944][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:03:59.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:03:59.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:03:59.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:03:59.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:03:59.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:03:59.957][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.958][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.960][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:03:59.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:03:59.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.966][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.967][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.969][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:03:59.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:03:59.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.975][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.976][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.983][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:03:59.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:03:59.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.994][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:03:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:03:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:03:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:03:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.001][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:04:00.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:04:00.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:04:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:04:00.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.010][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:00.011][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:00.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.013][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:00.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:00.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.020][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:04:00.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:04:00.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:04:00.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:04:00.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.029][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.030][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:04:00.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:04:00.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:04:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:04:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.046][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:04:00.047][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:04:00.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:04:00.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:04:00.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.055][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:04:00.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:04:00.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:04:00.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:04:00.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:00.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:04:00.132][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-05 22:04:00.133][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-05 22:04:00.134][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-05 22:04:00.155][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.157][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-05 22:04:00.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:00.159][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.184][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.185][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-05 22:04:00.186][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:00.187][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.198][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.200][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-05 22:04:00.201][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:00.202][biodb::testThat]
biodb.DEBUG[2024-07-05 22:04:00.204][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:00.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:00.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-07-05 22:04:00.210][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:00.223][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-07-05 22:04:00.239][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:04:00.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:04:00.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:00.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:00.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:00.248][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:04:00.250][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.251][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-05 22:04:00.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:00.253][biodb::testThat]
biodb.ERROR[2024-07-05 22:04:00.269][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-05 22:04:00.283][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-05 22:04:00.298][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:04:00.300][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:04:00.302][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:04:00.303][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:04:00.305][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.307][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.309][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:04:00.321][biodb::testContext]
biodb.INFO [2024-07-05 22:04:00.322][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:00.323][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-05 22:04:00.324][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:00.325][biodb::testContext]
biodb.INFO [2024-07-05 22:04:00.328][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:00.330][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:00.334][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:00.336][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:04:00.337][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.341][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:04:00.342][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.346][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:04:00.347][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.350][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:04:00.352][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:04:00.353][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:04:00.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.356][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:04:00.357][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:04:00.359][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.362][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:04:00.363][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:04:00.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.367][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:04:00.368][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:04:00.369][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:04:00.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.373][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:04:00.374][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.378][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:04:00.379][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:04:00.380][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:04:00.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.384][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:00.385][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:04:00.392][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:04:00.393][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:04:00.395][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:04:00.396][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:04:00.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.400][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:04:00.401][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:04:00.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.404][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:04:00.406][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:04:00.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.409][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:04:00.410][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:04:00.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.414][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:04:00.415][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:04:00.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.419][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:04:00.420][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:04:00.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.424][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:00.425][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:04:00.430][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:04:00.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.434][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:04:00.435][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:04:00.436][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:04:00.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.440][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:04:00.442][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.443][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:04:00.444][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.445][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:00.446][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.447][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.448][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.449][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.450][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:00.451][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:00.452][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.453][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:04:00.454][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:00.456][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.457][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.458][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:00.458][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:00.458][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:00.458][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:00.458][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:00.459][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:00.460][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.461][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.462][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:00.463][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.464][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.465][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.466][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.467][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:00.468][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:00.469][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.470][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.471][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:04:00.472][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.474][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:00.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.476][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:00.477][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.478][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.479][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.480][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.481][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:00.482][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:00.483][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.484][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:04:00.485][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:00.486][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.487][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.488][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:00.488][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:00.488][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:00.488][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:00.488][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:00.490][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:00.491][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.492][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.493][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:00.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.496][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.497][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:00.499][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:00.500][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.501][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.502][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:04:00.504][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.505][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:04:00.506][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.507][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:00.508][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.509][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.510][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.511][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.512][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:00.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:00.514][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.516][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:04:00.517][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:00.518][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.519][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.520][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.521][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:00.522][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.523][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.524][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:00.525][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.526][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.527][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.528][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.529][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:00.530][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:00.531][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.532][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.533][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:04:00.535][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.536][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:00.537][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.538][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:00.540][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.541][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.542][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.543][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.544][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:00.545][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:00.546][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.547][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:04:00.548][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:00.549][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.550][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.551][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.552][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:00.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.555][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:00.556][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.558][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.560][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.561][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:00.561][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:00.562][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.564][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:00.565][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:00.566][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.650][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:04:00.651][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:04:00.653][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:04:00.654][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:04:00.656][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:00.657][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:04:00.658][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:00.660][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:00.661][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:04:00.662][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:04:00.664][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:00.665][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:04:00.667][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:00.668][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:00.669][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:04:00.671][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:04:00.672][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:04:00.674][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:04:00.675][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:00.676][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:04:00.678][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:04:00.679][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:04:00.681][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:04:00.682][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:04:00.684][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:04:00.685][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:04:00.687][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:04:00.688][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:04:00.689][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:04:00.691][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:04:00.692][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:04:00.694][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:04:00.695][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:04:00.696][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:04:00.698][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:04:00.699][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:04:00.701][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:04:00.702][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:04:00.703][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:04:00.705][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:04:00.706][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:04:00.708][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:04:00.709][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:04:00.710][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:04:00.712][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:04:00.713][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:04:00.715][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:04:00.716][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:04:00.717][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:04:00.719][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:04:00.720][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:04:00.721][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:04:00.723][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:04:00.724][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:04:00.726][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:04:00.727][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:04:00.729][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:04:00.730][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:04:00.731][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:04:00.733][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:04:00.734][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:04:00.736][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:04:00.737][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:04:00.738][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:04:00.740][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:04:00.741][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:04:00.743][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:00.750][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:00.751][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:04:00.753][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:04:00.754][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:04:00.755][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:04:00.757][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:04:00.758][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:04:00.759][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:04:00.761][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:04:00.762][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:04:00.764][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:04:00.765][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:04:00.767][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:04:00.768][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:04:00.769][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:04:00.771][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:04:00.772][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:04:00.774][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:00.776][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:00.776][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.778][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.784][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.800][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.820][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:00.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:00.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:00.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:00.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:00.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:00.902][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:00.904][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:04:00.906][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.907][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.908][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.909][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:00.910][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.911][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.912][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.914][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:04:00.915][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:04:00.916][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:00.917][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.918][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:04:00.919][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:04:00.920][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:04:00.921][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:00.922][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:00.922][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:00.922][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:00.923][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:04:00.924][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.925][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.926][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:00.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:00.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:00.929][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:00.930][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:04:00.930][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:04:00.931][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:00.932][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:00.933][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:00.934][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:04:00.934][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:04:00.936][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:00.938][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:00.939][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:04:00.940][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:00.942][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:00.943][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:00.947][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:04:00.948][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:04:00.949][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:04:00.951][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:04:00.952][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:00.953][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:00.955][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:04:00.956][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:04:00.957][biodb::testThat]
biodb.INFO [2024-07-05 22:04:00.958][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-07-05 22:04:00.959][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:00.960][biodb::testThat]
biodb.DEBUG[2024-07-05 22:04:00.964][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:04:00.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:00.970][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:04:00.972][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:00.974][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:04:00.977][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:00.981][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:00.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:04:00.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:00.993][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:04:00.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:00.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:00.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.009][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.013][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.014][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:04:01.016][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.026][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:04:01.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.072][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:04:01.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.080][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:04:01.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.099][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:04:01.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.104][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:04:01.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.134][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:04:01.141][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.142][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:04:01.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.168][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.169][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:04:01.171][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.173][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:04:01.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.186][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-05 22:04:01.195][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.205][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-05 22:04:01.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:04:01.236][biodb::testThat]
biodb.INFO [2024-07-05 22:04:01.237][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-07-05 22:04:01.238][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:01.239][biodb::testThat]
biodb.DEBUG[2024-07-05 22:04:01.243][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.249][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-07-05 22:04:01.250][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.270][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-07-05 22:04:01.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.289][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:01.292][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:01.294][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-07-05 22:04:01.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:01.300][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-07-05 22:04:01.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:01.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:04:01.323][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:04:01.324][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:04:01.326][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:04:01.327][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:04:01.328][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.330][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.332][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:04:01.338][biodb::testContext]
biodb.INFO [2024-07-05 22:04:01.340][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:01.341][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-05 22:04:01.342][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:01.343][biodb::testContext]
biodb.INFO [2024-07-05 22:04:01.346][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:01.348][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:01.353][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:01.354][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:04:01.355][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.359][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:04:01.360][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.364][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:04:01.365][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.369][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:04:01.370][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:04:01.371][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:04:01.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.375][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:04:01.376][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:04:01.377][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.381][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:04:01.382][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:04:01.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.386][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:04:01.387][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:04:01.388][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:04:01.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.392][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:04:01.393][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.397][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:04:01.398][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:04:01.399][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:04:01.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.403][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:01.404][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:04:01.405][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:04:01.406][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:04:01.408][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:04:01.409][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:04:01.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.413][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:04:01.414][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:04:01.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.418][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:04:01.419][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:04:01.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.423][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:04:01.424][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:04:01.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.428][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:04:01.429][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:04:01.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.433][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:04:01.434][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:04:01.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.438][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:01.439][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:04:01.443][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:04:01.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.447][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:04:01.448][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:04:01.450][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:04:01.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.454][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:04:01.456][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.457][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:04:01.458][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.459][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:01.460][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.461][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.462][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.463][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.465][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:01.467][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:01.470][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.471][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:04:01.472][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:01.473][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.474][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.476][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:01.476][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:01.476][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:01.476][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:01.476][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:01.477][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:01.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.480][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:01.481][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.483][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.485][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.486][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:01.487][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:01.489][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.491][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.493][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:04:01.496][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.498][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:01.499][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.501][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:01.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.504][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.505][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.506][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:01.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:01.509][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.510][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:04:01.511][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:01.512][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.513][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.514][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:01.514][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:01.514][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:01.514][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:01.514][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:01.515][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:01.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.518][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:01.519][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.520][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.521][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.522][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.523][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:01.524][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:01.525][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.526][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.527][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:04:01.529][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.530][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:04:01.531][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.532][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:01.533][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.534][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.535][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.536][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.538][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:01.539][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:01.540][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.541][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:04:01.542][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:01.543][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.544][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.545][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.546][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:01.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.549][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:01.550][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.551][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.552][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.553][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.554][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:01.555][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:01.556][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.557][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.558][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:04:01.560][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.561][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:01.562][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.563][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:01.564][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.566][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.567][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.568][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.569][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:01.570][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:01.571][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.572][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:04:01.573][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:01.574][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.575][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.576][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.577][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:01.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.580][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:01.581][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.582][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.583][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.584][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.585][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:01.586][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:01.587][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.588][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:01.590][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:01.591][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.618][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.693][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:04:01.694][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:04:01.696][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:04:01.697][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:04:01.699][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:01.700][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:04:01.701][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:01.703][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:01.704][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:04:01.706][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:04:01.707][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:01.709][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:04:01.710][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:01.711][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:01.713][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:04:01.714][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:04:01.716][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:04:01.717][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:04:01.718][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:01.720][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:04:01.721][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:04:01.723][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:04:01.724][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:04:01.726][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:04:01.727][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:04:01.728][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:04:01.730][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:04:01.731][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:04:01.733][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:04:01.734][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:04:01.736][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:04:01.737][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:04:01.738][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:04:01.740][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:04:01.741][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:04:01.742][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:04:01.744][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:04:01.746][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:04:01.747][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:04:01.748][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:04:01.750][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:04:01.751][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:04:01.753][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:04:01.754][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:04:01.755][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:04:01.757][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:04:01.758][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:04:01.760][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:04:01.761][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:04:01.762][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:04:01.764][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:04:01.765][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:04:01.767][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:04:01.768][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:04:01.769][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:04:01.771][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:04:01.772][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:04:01.773][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:04:01.775][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:04:01.776][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:04:01.778][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:04:01.779][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:04:01.780][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:04:01.782][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:04:01.783][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:04:01.785][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:04:01.786][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:01.787][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:01.789][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:04:01.790][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:04:01.792][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:04:01.793][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:04:01.794][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:04:01.796][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:04:01.797][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:04:01.798][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:04:01.800][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:04:01.801][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:04:01.803][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:04:01.804][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:04:01.805][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:04:01.807][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:04:01.808][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:04:01.810][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:04:01.812][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:01.813][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:01.814][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.816][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.853][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.887][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:01.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:01.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:01.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:01.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:01.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:01.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:01.935][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:01.937][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:04:01.939][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.940][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.941][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.942][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:01.943][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.944][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.945][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.946][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:04:01.947][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:04:01.948][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:01.949][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.950][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:04:01.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:04:01.953][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:04:01.954][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:01.955][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:01.955][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:01.955][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:01.956][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:04:01.957][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.959][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:01.960][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:01.961][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:01.962][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:01.963][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:04:01.963][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:04:01.964][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:01.965][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:01.966][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:01.967][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:04:01.967][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:04:01.968][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:01.970][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:01.972][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:04:01.979][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:01.981][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:01.982][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:01.985][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:04:01.986][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:04:01.987][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:04:01.989][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:04:01.990][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:01.991][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:01.993][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:04:01.994][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:04:01.996][biodb::testThat]
biodb.INFO [2024-07-05 22:04:01.997][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-05 22:04:01.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:01.998][biodb::testThat]
biodb.DEBUG[2024-07-05 22:04:02.002][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:04:02.007][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:02.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:04:02.010][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:02.013][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:04:02.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:02.020][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:02.021][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-05 22:04:02.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:02.033][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-07-05 22:04:02.046][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:04:02.047][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:04:02.049][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:04:02.050][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:04:02.051][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.052][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.054][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:04:02.062][biodb::testContext]
biodb.INFO [2024-07-05 22:04:02.064][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:02.065][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-05 22:04:02.066][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:04:02.067][biodb::testContext]
biodb.INFO [2024-07-05 22:04:02.070][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:02.072][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:02.077][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:02.078][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:04:02.079][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.083][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:04:02.084][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.088][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:04:02.089][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.093][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:04:02.094][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:04:02.095][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:04:02.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.099][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:04:02.100][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:04:02.101][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.106][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:04:02.108][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:04:02.109][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.114][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:04:02.115][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:04:02.116][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:04:02.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.120][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:04:02.121][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.125][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:04:02.126][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:04:02.127][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:04:02.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.131][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:02.132][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:04:02.133][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:04:02.135][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:04:02.136][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:04:02.138][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:04:02.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.143][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:04:02.144][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:04:02.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.148][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:04:02.149][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:04:02.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.154][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:04:02.155][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:04:02.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.159][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:04:02.160][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:04:02.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.164][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:04:02.165][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:04:02.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.169][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:04:02.170][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:04:02.175][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:04:02.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.179][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:04:02.180][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:04:02.181][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:04:02.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.185][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:04:02.187][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.188][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:04:02.189][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.190][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:02.191][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.192][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.194][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.195][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.196][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:02.197][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:02.198][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.199][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:04:02.200][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:02.201][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.202][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.203][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:02.203][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:02.203][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:02.203][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:02.203][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:02.204][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:02.205][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.206][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.207][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:02.208][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.209][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.210][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.211][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.213][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:02.213][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:02.214][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.216][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.217][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:04:02.218][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.220][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:02.221][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.222][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:02.223][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.224][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.225][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.226][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.227][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:02.228][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:02.229][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.230][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:04:02.231][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:02.232][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.233][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.235][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:02.235][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:02.235][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:02.235][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:04:02.235][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:04:02.236][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:02.237][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.238][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.239][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:02.240][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.241][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.242][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.243][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.244][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:02.245][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:02.246][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.247][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.248][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:04:02.250][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.251][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:04:02.252][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.253][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:02.254][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.255][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.257][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.258][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.259][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:04:02.260][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:02.261][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.262][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:04:02.263][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:02.264][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.265][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.266][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.267][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:02.268][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.269][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.270][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:02.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.272][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.273][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.274][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.276][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:02.276][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:02.277][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.278][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.280][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:04:02.281][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.283][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:04:02.284][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.285][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:02.286][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.287][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.288][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.290][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:04:02.291][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:02.292][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.293][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:04:02.294][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:02.295][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.296][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.297][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.298][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:04:02.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.300][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.301][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:02.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.304][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.305][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.307][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:02.308][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:02.309][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.310][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:04:02.311][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:02.312][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.402][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:04:02.404][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:04:02.405][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:04:02.407][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:04:02.408][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:02.409][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:04:02.411][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:02.412][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:02.413][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:04:02.415][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:04:02.416][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:02.418][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:04:02.419][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:04:02.420][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:04:02.422][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:04:02.423][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:04:02.425][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:04:02.426][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:04:02.427][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:02.429][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:04:02.430][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:04:02.432][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:04:02.433][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:04:02.434][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:04:02.436][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:04:02.437][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:04:02.439][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:04:02.440][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:04:02.441][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:04:02.443][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:04:02.444][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:04:02.445][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:04:02.447][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:04:02.448][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:04:02.450][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:04:02.451][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:04:02.453][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:04:02.454][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:04:02.455][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:04:02.457][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:04:02.458][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:04:02.460][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:04:02.461][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:04:02.463][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:04:02.464][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:04:02.465][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:04:02.467][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:04:02.468][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:04:02.470][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:04:02.471][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:04:02.473][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:04:02.474][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:04:02.475][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:04:02.477][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:04:02.478][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:04:02.480][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:04:02.481][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:04:02.483][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:04:02.484][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:04:02.486][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:04:02.487][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:04:02.488][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:04:02.490][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:04:02.491][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:04:02.493][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:04:02.494][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:04:02.495][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:02.497][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:02.498][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:04:02.500][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:04:02.501][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:04:02.502][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:04:02.504][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:04:02.505][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:04:02.507][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:04:02.508][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:04:02.509][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:04:02.511][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:04:02.512][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:04:02.514][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:04:02.515][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:04:02.517][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:04:02.518][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:04:02.519][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:04:02.521][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:04:02.523][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:04:02.524][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.526][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:04:02.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:04:02.642][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.20-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:04:02.644][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:04:02.646][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.647][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.648][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.649][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:04:02.650][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.652][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.653][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.654][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:04:02.655][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:04:02.656][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:04:02.657][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.658][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:04:02.659][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:04:02.660][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:04:02.661][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:04:02.662][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:04:02.662][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:04:02.662][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:04:02.663][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:04:02.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.665][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.667][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:04:02.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:04:02.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:04:02.669][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:04:02.671][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:04:02.671][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:04:02.672][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:04:02.673][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:04:02.674][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:04:02.675][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:04:02.675][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:04:02.676][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:04:02.678][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:04:02.679][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:04:02.681][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:04:02.682][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:04:02.684][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:04:02.687][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:04:02.688][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:04:02.689][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:04:02.691][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:04:02.692][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:02.693][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:04:02.695][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:04:02.696][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:04:02.697][biodb::testThat]
biodb.INFO [2024-07-05 22:04:02.699][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-05 22:04:02.700][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:04:02.701][biodb::testThat]
biodb.DEBUG[2024-07-05 22:04:02.704][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:04:02.709][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:02.710][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:04:02.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:02.713][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:04:02.717][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:04:02.720][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:04:02.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-05 22:04:02.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:02.725][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-05 22:04:02.736][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-05 22:04:02.737][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:04:02.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-05 22:04:02.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:04:02.754][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-07-05 22:04:02.756][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:04:02.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:04:02.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:04:02.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:04:02.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:04:02.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.787][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:04:02.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:04:02.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:04:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:04:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.796][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:04:02.797][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:04:02.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:04:02.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:04:02.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:04:02.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:04:02.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:04:02.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:04:02.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.813][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.814][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:02.815][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:02.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:04:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.823][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:04:02.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:04:02.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.826][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:04:02.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:04:02.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.832][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:02.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:02.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.837][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:04:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.844][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:04:02.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:04:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.847][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:04:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:04:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.853][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:04:02.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:04:02.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.858][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:04:02.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:04:02.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.865][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:04:02.866][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:04:02.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.870][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:04:02.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:04:02.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:04:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:04:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:04:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:04:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:04:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:04:02.918][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-05 22:04:02.924][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:04:02.925][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:04:02.926][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:04:02.927][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:04:02.928][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:04:02.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:04:02.930][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:04:02.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:04:02.932][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:04:02.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 381 ]
>
> proc.time()
user system elapsed
19.12 2.20 51.35
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 2.28 | 1.69 | 5.07 | |
| ChebiEntry | 0.59 | 0.00 | 0.59 | |